Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009515.1_202016-02-08]
227 sequences; 9,374,785 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq31 136 4e-27
seq2 131 2e-25
seq50 125 7e-24
seq5 105 7e-18
>seq31
Length=97376
Score = 136 bits (150), Expect = 4e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || |||||||||||||| |||||||| || || || | ||| || || ||
Sbjct 97272 GTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTG 97213
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
|| || |||||||| ||||| ||||| || || || || ||||| || |||||||| ||
Sbjct 97212 CTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTT 97153
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
|||||| || | ||||| || || ||||| || ||||| || || ||||| ||
Sbjct 97152 GGATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGT 97093
Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTGTT 134719
|| |||||||| ||||| |||||||| ||
Sbjct 97092 TAGGGTTTTAACAAAAATCTGCATTTTTTT 97063
>seq2
Length=521926
Score = 131 bits (144), Expect = 2e-25
Identities = 169/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545
|| ||||| | || || || ||||| | || || ||||| || ||||||||||| | |
Sbjct 435559 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 435618
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
| | | | | ||| || || || || || |||||||||||||| || || || || ||
Sbjct 435619 AGAGTTCT-ACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGG 435677
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| ||||| || |||||||| || ||||| ||| | |||||||| || || ||
Sbjct 435678 AATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGAC 435737
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716
|| | ||||| || ||||||||||| || || |||||||| ||||||||
Sbjct 435738 TTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 435788
>seq50
Length=24197
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| ||||| |||| || || | ||| || ||||||||||||||||| ||||| || |
Sbjct 339 CCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAA 280
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | ||| || || || || || || || |||||||| ||||| || || ||
Sbjct 279 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 220
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| ||||| || |||||||| || |||||| || | || || || || || ||
Sbjct 219 ATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACC 160
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| || || ||||| |||| ||| || |||||||| |||||
Sbjct 159 TCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 113
>seq5
Length=409289
Score = 105 bits (116), Expect = 7e-18
Identities = 146/202 (72%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575
|| || |||||||| ||||||||||| | ||| | | | | || || | || || ||
Sbjct 79294 GTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCA-TCCTCCAATTGCTTACC 79236
Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635
||||| |||| |||||| || || || || || || || || || ||||| || ||
Sbjct 79235 AGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTT 79176
Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695
||| ||| | |||||||| || ||||| || | || || || |||||||| | ||
Sbjct 79175 GACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGT 79116
Query 134696 TTTAACGAAAATTTGCATTTTG 134717
|| ||||||||||||||||||
Sbjct 79115 CTTTACGAAAATTTGCATTTTG 79094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505396965932040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |