Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009515.1_202016-02-08] 227 sequences; 9,374,785 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq50 165 2e-35 seq2 159 7e-34 seq31 158 3e-33 seq5 156 9e-33 seq14 131 4e-25 >seq50 Length=24197 Score = 165 bits (182), Expect = 2e-35 Identities = 187/250 (75%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 282853 CCTAAAAAATAAAAC---GTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTT 282909 |||||| ||| ||| || |||||| | || | | ||||| || | ||| || Sbjct 362 CCTAAACAATTGAACAAAGTTCACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATT 303 Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 | ||||| || ||||| |||| ||| || | || || || ||||| || || || |||| Sbjct 302 CCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGA 243 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 |||||||||| |||||| |||||||| ||||||||||| ||||| | ||| ||| ||| Sbjct 242 TCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTAT 183 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 | ||||| || || | || || || |||||||| |||||||| || | |||||| |||| Sbjct 182 CAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGA 123 Query 283090 ATATCTGCAT 283099 | |||||||| Sbjct 122 AAATCTGCAT 113 >seq2 Length=521926 Score = 159 bits (176), Expect = 7e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | || ||||| || || || || || |||||||||||||||| Sbjct 435558 ACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGA 435617 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | || || || ||||| || || ||||| |||||||||||||||||| || Sbjct 435618 CAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGG 435677 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| ||||| | || || | ||||| ||||| || | ||||| Sbjct 435678 AATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGAC 435737 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| | || || |||||||| || || ||||| ||||| ||||||||||| Sbjct 435738 TTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 435788 >seq31 Length=97376 Score = 158 bits (174), Expect = 3e-33 Identities = 152/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||||||||||||| |||| ||| || | || || || ||||| || || ||||| Sbjct 97260 TTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAA 97201 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || |||||||| |||||| |||||||| ||||| ||||| ||||| | ||| || | Sbjct 97200 AATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTGGATTTGACATT 97141 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| |||||||| || | || || || |||||||| |||||||| || | || ||||| Sbjct 97140 ATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAAC 97081 Query 283088 GAATATCTGCATTTT 283102 || ||||||||||| Sbjct 97080 AAAAATCTGCATTTT 97066 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 301477 CATGGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTAC 301536 ||||||||| || || | | ||||||| |||| |||| ||||||| || ||||| Sbjct 51385 CATGGAGAATGCTTTGTCCTGAACGATGGTGGTGAAGTCGATTTGGATCTCGGAAACTAC 51326 Query 301537 GAACGTTTCACTTCATTAAC-CCTTAAGC-GTGAAAGTAATTTTACGACTGGCCAAGTTT 301594 ||| | | | ||| || | || ||| | | || || |||| ||||| | || | Sbjct 51325 GAAAGAT--ATCTCAATATCACCCTAACCAGAGATCACAACATTACCACTGGTAAGGTCT 51268 Query 301595 ATTTAAAAGTTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTG 301654 ||| ||| ||||||||||| ||| | | ||| |||||||||||| || || || |||| Sbjct 51267 ATTCAAAGGTTATCGAAAAGGAAAGAAACGGTGACTATCTCGGAAAAACTGTCCAGGTTG 51208 Query 301655 TTCCCCACATCACCGATG 301672 | || ||| | ||| ||| Sbjct 51207 TCCCTCACTTAACCAATG 51190 >seq5 Length=409289 Score = 156 bits (172), Expect = 9e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | ||| |||| || || || || ||||||||||||||||||| Sbjct 79325 ACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGA 79266 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | |||||||| | ||| || || |||||||||| ||| ||||||||| || Sbjct 79265 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 79206 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || ||| | || |||||||| |||| || || Sbjct 79205 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCAC 79146 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||| |||||||| || | ||||| ||||| || |||||||| Sbjct 79145 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 79095 >seq14 Length=262326 Score = 131 bits (144), Expect = 4e-25 Identities = 184/256 (72%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 316947 AATGAAGTCAACGATAGACGTGTTAGATTCGGATCCGTCGAGGTCATGCTCAACATATGC 317006 |||||||||||| | || |||| | ||| || || |||| ||| ||||| || || | Sbjct 214347 AATGAAGTCAACAGTGGAGGTGTCGGCTTCAGAACCATCGATGTCGTGCTCGACGTAGAC 214406 Query 317007 AGTTTTCAGAAT-ATCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCA 317065 |||| | | | | ||| | | ||||| || || | |||||||| |||| || |||| Sbjct 214407 AGTTCT-ACATTCATCTTGAGATGGGAAGCCCTCAACTTGACCGTTGGCAATAGCTCTCA 214465 Query 317066 TCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCA 317125 ||| || ||||| |||||||| || || || || |||||||| || | | |||||| Sbjct 214466 TCAAAGTTGACTTACCAGCACCGTTAGGACCACAGAGACCATAACGTCTAGCTCTCTTCA 214525 Query 317126 GATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAAT 317185 | || | || |||||||| | |||||| |||| || ||||| ||||||||||| | Sbjct 214526 AACGGAATTGAGTCTTGTTCAGCAAGATCTTAGCACCGTAAGCCAGGGAGAACTCACAGT 214585 Query 317186 CACACAGGTCCTCGCC 317201 ||| || || || || Sbjct 214586 TACATAGATCTTCACC 214601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736155624458