Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009525.1_202016-02-08]
172 sequences; 9,356,930 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq27 235 6e-57
>seq27
Length=543458
Score = 235 bits (260), Expect = 6e-57
Identities = 580/865 (67%), Gaps = 21/865 (2%)
Strand=Plus/Plus
Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971
||||||||||| ||| | |||||||||||||| ||||| || | ||||| || || |
Sbjct 215768 TTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTCT 215827
Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031
|||| || ||||| ||||| | | | | ||| || ||||| | | ||
Sbjct 215828 CCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTGCCCAGAGCTACCAGTA 215887
Query 16032 ATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTA-TAAGT 16090
||| || || || || || | ||| || ||||| ||| ||| || || || | ||||
Sbjct 215888 GTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTAAGG 215947
Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150
| || |||||||| | ||| || | || ||| ||| | || || ||| | || ||
Sbjct 215948 AG-ACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGATAATC 216006
Query 16151 TCGGTGGCTCGTGTTTCAGACGG--TGTATGGTTTAGGTGTTTAAACATTAGACACGCGA 16208
| | || || | || | | ||| ||||| || ||| | | || || |
Sbjct 216007 TT--TTCAACGATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGCAAGCAA 216064
Query 16209 AGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCA 16268
|||| |||| ||| |||||||||| ||||| || ||||| || || || |||||||
Sbjct 216065 AGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCA 216124
Query 16269 TTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCT 16328
| |||| ||||| |||||||| || | |||||| || || |||||||| |||||||
Sbjct 216125 TGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCT 216184
Query 16329 CAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATT 16388
|||||| || || || | || ||||| ||| || ||||| | || | |||||||
Sbjct 216185 CAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATCCATC 216244
Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA--A 16446
|| |||| || || |||| ||| ||||| || || || ||||| || |||| |
Sbjct 216245 TCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAGGA 216304
Query 16447 TTTC--TCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCT 16504
||| || ||| || ||| | || || ||||||||||| || ||| | ||
Sbjct 216305 ATTCAGACTCTTT--TG--GATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCG 216360
Query 16505 GAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGT 16564
||||| |||||||| || ||||| || || || |||||| || || | | |||
Sbjct 216361 GAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAGTTGA 216420
Query 16565 ACTTC--CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAA 16622
|| || ||| | |||| |||| ||| ||| ||||| || ||||||||| |||||||
Sbjct 216421 ACCTCAGCAC-TGAAAT-TTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGCAA 216478
Query 16623 AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA--GAT-GTAAGAATATGCCAAT 16679
| || || | | | ||||| ||||||| | | | | || || ||| ||| |
Sbjct 216479 AGAAGGCAAGGACTCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTATTCCAGT 216538
Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTT 16739
| | ||||| || | || | ||| || | ||||||||| ||| | |||| |
Sbjct 216539 CATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTGCT 216598
Query 16740 TATACATTTTCCAAATATCATTGTA 16764
| ||||||| ||| ||||| | |||
Sbjct 216599 TGTACATTTGCCAGATATCGTGGTA 216623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511413300459040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |