Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009525.1_202016-02-08] 172 sequences; 9,356,930 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq22 118 1e-21 seq21 118 1e-21 seq13 107 2e-18 seq12 104 2e-17 seq4 95.1 1e-14 >seq22 Length=213742 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| ||||| ||||| | ||| || || |||| ||| Sbjct 315 TGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGC 256 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| ||||||||||| || ||||| ||||| || |||||||| || Sbjct 255 TTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTA 196 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || | || || || ||||| || || ||||| | || || || || Sbjct 195 GATTTGA-CGTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTACCAGT 137 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || ||||| ||||| Sbjct 136 TAGAGTCTTGACGAAAATCTGCAT 113 >seq21 Length=97381 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || ||||| | ||| || || |||| ||| Sbjct 97278 TGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGC 97219 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || || ||||||||||| || ||||| ||||| ||||||||||| || Sbjct 97218 TTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTG 97159 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| || | ||||| || ||||| || || ||||| | || || || ||| Sbjct 97158 GATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTT 97099 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||||||| ||||| Sbjct 97098 AGGGTTTTAACAAAAATCTGCAT 97076 >seq13 Length=406130 Score = 107 bits (118), Expect = 2e-18 Identities = 308/462 (67%), Gaps = 14/462 (3%) Strand=Plus/Plus Query 123303 GCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAA-AACGCAA 123361 || || |||||||| || ||||||| || |||| ||||| || || || | || | | Sbjct 335898 GCCATTTATCTAGAGCCATGGCACGAAGAAGTGTTTGATTTGTTGAACTTGAGAAAGAAT 335957 Query 123362 CATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTT 123421 || || ||| || | | |||| | ||||| || |||||||| ||| | ||||| | Sbjct 335958 CACGGCAA-GGAGGAGATCAGAGCCAGAGATTTATTCTACGCTTTGTGGATTCCCGACCT 336016 Query 123422 GTTTATGCGACGCGT--AAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGT 123479 |||||| | || |||||| | | | |||| ||| | ||| | || Sbjct 336017 TTTTATGGAAAAAGTCGAAAAGA--ATGAGGACTGGTGCCTCTTCAACCCCTTGCA-TGC 336073 Query 123480 CCC-GGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCG 123538 | || |||| || ||||||||| | || || || | || || | |||||| Sbjct 336074 CAAAGGTTTGAATGATGTTTACGGCGAACAATTCAACCTCCTTTATGCTGAGTACGAGAA 336133 Query 123539 CGAAGGCAAAC-AGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAA 123597 ||||| || | ||||| || |||| || | | || | || |||| | || Sbjct 336134 -GAAGGGAATGTATGTTAGAAAGATTCCTGCTCAACAATTATGGAATGCTATTGTAGACG 336192 Query 123598 CACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCA 123657 | ||| | || || || || |||| |||| | || |||||| | |||||||||||| | | Sbjct 336193 CTCAAATTGAGACAGGGACTCCGTTCATGTTGTATAAAGACTCTTGCAACAGGAAATCTA 336252 Query 123658 ATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA-- 123715 | || ||||||||||| |||||| ||||| |||| | |||| |||||| | || || Sbjct 336253 ACCAAAGCAACTTGGGTACAATACAATGTTCTAATTTGTGCTGTGAAATTGTGGAGTACT 336312 Query 123716 CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | | | | || ||| | || |||||||||||||| || || Sbjct 336313 CTTCAAGG--GACCAAATCGCAGTGTGTAATTTGGCCTCCAT 336352 >seq12 Length=252128 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||| || || |||| || || ||||| ||||| || || || | ||| || Sbjct 86105 CTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCG 86046 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| ||| || || || | ||||| ||||| ||||| || ||||| ||||| || Sbjct 86045 TCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTG 85986 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || |||| || | ||||||||| ||||||||||| | |||| Sbjct 85985 TCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATA 85926 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || || ||||| ||||| Sbjct 85925 GTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 85891 >seq4 Length=489146 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || ||||||||||| || || || | ||| || ||| |||||||| Sbjct 79265 TGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGC 79206 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | |||| || || ||||| || ||||| || || || || ||||| || Sbjct 79205 TTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTG 79146 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||||||||| || || | || | || || ||||| Sbjct 79145 GACTTGA-CGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGT 79087 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| ||||||||||| Sbjct 79086 AAGGGTCTTTACGAAAATTTGCAT 79063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002228193120