Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009525.1_202016-02-08]
172 sequences; 9,356,930 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq27 289 3e-73
seq31 244 1e-59
>seq27
Length=543458
Score = 289 bits (320), Expect = 3e-73
Identities = 613/901 (68%), Gaps = 19/901 (2%)
Strand=Plus/Plus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
||||| || || | |||||| ||||| ||||| || ||||| || | || || ||
Sbjct 215767 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTC 215826
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
||||| || ||||||||||| || || || || | |||||| || | ||| |||
Sbjct 215827 TCCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTGCCCAGAGCTACCAGT 215886
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
||||| || || || || | || ||| | ||||| || ||||| || | |||
Sbjct 215887 AGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTAAG 215946
Query 18850 TTAACAGGTAGTGCATCTGT-AAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908
||||| || || ||||| ||| | | || ||| || | || ||||||| |||||
Sbjct 215947 GAGACAGGAAGAGCGTCTGTGAAGTACCTTTT-TTCGATCTCGACAGCCTCTGTGATAAT 216005
Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGA--AGATGTTTAAACATCAAACATGCA 18966
| |||| | || ||| | | ||| | | ||| ||| | ||| || |||
Sbjct 216006 CTTTTCAACGATTTCCTCACTGGCTC--TATTGTTTAAATGAGAAAATAGCAAGCAAGCA 216063
Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026
|| ||| |||| |||||||||||| | || | ||||| || || || ||||| |||
Sbjct 216064 AAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGC 216123
Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086
|| || ||||| || || |||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 216124 ATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCC 216183
Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCA 19145
|| || || || || ||||| | | ||| | ||| | ||||| | || | ||||||
Sbjct 216184 TCAACAGCAGCGAAGGCAACCAAACGTTCAGC-GAACAATGCATCGTCATCAGAAATCCA 216242
Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205
| ||| ||||| |||||||| | ||| | |||||| || ||||| || | ||| || ||
Sbjct 216243 TCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAG 216302
Query 19206 --ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263
|| || | ||| | || |||||| | || | ||| |||| || ||| | ||
Sbjct 216303 GAATTCAGA--CTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCG 216360
Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323
|| ||||| || || || ||||| || |||||||| ||| ||||||| | | ||
Sbjct 216361 GAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAGTTGA 216420
Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383
|| ||| || || |||| ||||| |||||||| || || || ||| || |||||
Sbjct 216421 ACCTCAGCACTGAAATTTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGCAAAG 216480
Query 19384 AATGCTAATACATGTTTA-ATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAAT 19438
|| || | || | | | || || |||||||| | ||| || ||||||| |
Sbjct 216481 AAGGCAAGGAC-TCTCGAGATGAAGAATTTTTCAT-TATCGTTCATACGATTATTCCAGT 216538
Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498
||| | ||| ||| | |||| ||| ||| | |||||||| ||||| || || | |
Sbjct 216539 CATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTGCT 216598
Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTT 19558
| ||||| | ||| ||||| | || | | ||| || | ||||| | | |||||| |
Sbjct 216599 TGTACATTTGCCAGATATCGTGGTACTTCAAAGGGAAGAGCACAAAACGACGTTTATTCT 216658
Query 19559 C 19559
|
Sbjct 216659 C 216659
>seq31
Length=271146
Score = 244 bits (270), Expect = 1e-59
Identities = 623/945 (66%), Gaps = 6/945 (1%)
Strand=Plus/Plus
Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935
||| || ||||| || | ||||| ||||| ||| | || || |||| | ||
Sbjct 88743 AAGAGCAATAGAAGCCAAGTTACAGACAGCAGTCTCTTCCGGGGAAGAGTATTCAACAAT 88802
Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTAttnnnnttGTT 47995
|||| || || ||| |||| || |||||| || | || ||| | |||||
Sbjct 88803 TTCACAGCAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTAGTTTTTTTGTT 88862
Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055
||| || ||||| || ||||| || || || ||||||||| | || | |||| ||| |
Sbjct 88863 ACAAGCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGC 88922
Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115
| ||||| | || || || ||| | | || | ||||||| |
Sbjct 88923 GTACCAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTC 88982
Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175
|| || | |||||||||||| ||||| || | | | |||||| |||| | ||| |
Sbjct 88983 GTACAATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTTGGAGA 89042
Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235
| || | |||||| ||| | || |||||| |||| || | ||| || ||||| |
Sbjct 89043 GAACAGGGTCCAATCGCCATTCTGTTCTACTCTTTTCATGAACAGATCAGGGATCCACAA 89102
Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295
||| ||||| || |||| ||| | || || || ||| ||| | || ||||
Sbjct 89103 AGCGGGGAATAAGTCTCTAGCTCTGATCTCCTCTTTACCATGGTTCTTACGAATATCAAT 89162
Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355
||| | | || || ||||||||||| || || || | || | | |||| || |||||
Sbjct 89163 GAAGGCAAAGATGTCGGCATGCCATGGCTCCAAGTACAAAGCAAATGCACCAGGACGTTT 89222
Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415
||||| ||||| || | ||| | ||||| ||||| | || || | |||||| | |||
Sbjct 89223 GTTACCACCTTGGTCAACATAACGAGCAGTGTTGTTGAAGACCCTCACCATTGGAATAAT 89282
Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475
|||||| || |||| || || || | ||| || ||| | || | |||||| |||
Sbjct 89283 ACCATTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAATATTATGAAT 89342
Query 48476 -TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534
|| || ||| || ||||| || |||| || |||| |||||| || | ||||| |
Sbjct 89343 GTGCAA-ACCAATTCCACCAGCAGTTTTGGAGATTAAAGCACATTCCTTCAAAGTATCGT 89401
Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594
|||| ||||| || ||||| ||| | || ||||| |||||||| || |
Sbjct 89402 AAATGCCTTCAATTGAGTCATCCCGCATGGCAACTAAGAAACATGATGACATTTGTGGGT 89461
Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT--CTGATAA 48652
|| || || | ||||| | || ||||| |||||| | || | |||| || |||
Sbjct 89462 GAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCATGAGTGAAATACTTCTGACTCATA- 89520
Query 48653 CAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACG 48712
|| ||||| ||||||||||| | || || ||| || || |||| |||||
Sbjct 89521 -AAGTTATAAGTTTCAATAACTCTTGCAATGTCATCACCATGAATGCCGATAGCAACACG 89579
Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772
||| | || | |||||| | ||| ||| || ||| ||| ||| ||| || ||| |
Sbjct 89580 CATAATCAAGTGTTGAGGACGTTCTGCAACATTACCATTAATTCTCAGAAGGTAAGATCT 89639
Query 48773 TTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817
|||||| || || || ||||| ||||| || |||||| ||||
Sbjct 89640 TTCCAAGGTCTTGAATCCAAAGTAGTTATACTGAAAGTCTCTATC 89684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562107591466080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |