Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009525.1_202016-02-08] 172 sequences; 9,356,930 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq31 208 9e-49 seq27 104 3e-17 >seq31 Length=271146 Score = 208 bits (230), Expect = 9e-49 Identities = 789/1225 (64%), Gaps = 21/1225 (2%) Strand=Plus/Minus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 || || | ||||| || || ||||| |||||||| || ||||||| || | || | Sbjct 89590 ACTTGATTATGCGTGTTGCTATCGGCATTCATGGTGATGACATTGCAAGAGTTATTGAAA 89531 Query 104289 CATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCT 104347 | || || ||| || | |||| |||| ||| || | || || || || || ||| Sbjct 89530 CTTATAACTTTATGAGTCAGAAGTAT-TTCACTCATGCCTCTCCTACTCTGTTTAACGCT 89472 Query 104348 GGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATC 104407 ||||| || || |||||||| || ||| | | |||| ||| |||||||| Sbjct 89471 GGTACCCCTCACCCACAAATGTCATCATGTTTCTTAGTTGCCATGCGGGATGACTCAATT 89412 Query 104408 AACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATT 104467 | || || || | ||| | | ||| ||||| |||||| || ||||| || ||| Sbjct 89411 GAAGGCATTTACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAACTGCTGGTGGAATT 89352 Query 104468 GGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAA 104527 || ||||||| ||| || | | |||| ||| ||| || || || ||| Sbjct 89351 GGTTTGCACATTCATAATATTCGTGCCACAGGATCCTACATTGCTGGTACTAACGGTACT 89292 Query 104528 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA 104587 || ||||||||||||||||| | | || || ||| ||| || || ||||| | ||| Sbjct 89291 TCGAATGGTATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCGTTATGTTGACCAA 89232 Query 104588 GCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATAT 104643 | | || | || | || | | || | || | ||||||||||| || || || Sbjct 89231 GGT-GGTAACAAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATGGCATGCCGACAT 89173 Query 104644 CATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATC 104702 | | | ||| |||| | ||| ||||| ||| | ||||| | | | || | || Sbjct 89172 CTTTGCCTTCATTGATATTCGTAAGAACCATGGTAAAGAGGA-GATCAGAGCTAGAGACT 89114 Query 104703 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 104762 | ||| ||||| | ||||| || ||||| |||||||| ||||| || ||| |||| ||| Sbjct 89113 TATTCCCCGCTTTGTGGATCCCTGATCTGTTCATGAAAAGAGTAGAACAGAATGGCGATT 89054 Query 104763 GGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 104822 || | || || | |||| | || ||||| || |||| | | || || || |||| Sbjct 89053 GGACCCTGTTCTCTCCAAGTGAAGCTCCTGGCCTTGCCGACGTCTATGGAGATGAATTTG 88994 Query 104823 AAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCG 104882 | | | ||| || ||||| | |||||||| | | || | ||| Sbjct 88993 AGGAATTGTACGAAAGATACGAAAAGGAAGGTCGTGGAAGACAAACCATCAAAGCCCAAA 88934 Query 104883 ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACA 104942 | | ||| | || || || || | ||||| || |||||||| |||| |||||| || | Sbjct 88933 AGCTTTGGTACGCCATCCTTGAGGCACAAACAGAAACTGGTACTCCATTCATGCTGTATA 88874 Query 104943 AAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATC 105002 | || || |||||| |||| | ||| || ||||| |||||||| || || || || | Sbjct 88873 AGGATGCTTGTAACAAAAAAACTAACCAGAAGAACTTGGGTGTCATTAAATCCTCTAACC 88814 Query 105003 TCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCAT 105062 | || ||||| | |||| | | || ||||| ||||| |||||| | || | Sbjct 88813 TTTGCTGTGAAATTGTTGAATACTCTTCCCCGGAAGAGACTGCTGTCTGTAACTTGGCTT 88754 Query 105063 CAATCGCTCTCCCCAAGTATGTGGATCCAGA-GACAAAGACATTTG-----ATTATGAAA 105116 | || ||||| || | ||| || | || || | || || | | ||||| Sbjct 88753 CTATTGCTCTTCCAGCCTTTGTTGAAACCGATGATACTCACTGCTGGTACAACTTTGAAA 88694 Query 105117 AACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATT 105176 | || || ||| | || ||| || || ||| | |||||| |||| || ||||||| Sbjct 88693 AGCTGCATGAAATCACCAAAGTGGTTACTCGTAACTTGAACAGAATTATCGACAGAAATT 88634 Query 105177 TTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGT 105235 ||||||||||| ||| ||| | | ||| |||||| | | | || || | | | ||| Sbjct 88633 TTTACCCCGTTCCAGA-AGCTAGGAGATCGAATATGCGTAATAGACCTATAGCTGTGGGT 88575 Query 105236 GTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCG 105295 ||||| ||| | || |||| || || | | | |||||||| ||||| Sbjct 88574 GTTCAAGGTTTAGCTGATGCTTTTATGAAGTTGAGAATTCCTTTTGATTCTCCAGAAGCC 88515 Query 105296 AAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCA 105355 || | | ||| | || ||||| || || || || || ||| | || || | || Sbjct 88514 AAACAGCTTAATATTCAGATTTTTGAAACTATCTACCATGCAGCTTTGGAAGC--CTCCA 88457 Query 105356 --GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAG 105413 || || || | | || || | || |||||||| | ||||||||||| || || | Sbjct 88456 ACGAATTAGCCGTCGAAGAAGGAGCCTACGAAACCTTCCAAGGTTCTCCAGCATCTCAGG 88397 Query 105414 GGGTGCTTCAATTTGATATGTGGGA 105438 | | | |||| ||| ||||||| Sbjct 88396 GCATTTTGCAATATGACTTGTGGGA 88372 >seq27 Length=543458 Score = 104 bits (114), Expect = 3e-17 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 |||||| | || |||| ||||| || | || || || ||||| |||| ||| || | Sbjct 216293 GCCATCGAGACCATTCCATGTATCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTTCT 216234 Query 94783 -ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 94841 | | | || || || ||||| || | | || || || ||||||||||||||| Sbjct 216233 GATGACGATGCATTG-TTCGCTGAACGTTTGGTTGCCTTCGCTGCTGTTGAGGGTATCTT 216175 Query 94842 CTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTC 94900 ||| || || || || ||| |||| | ||| | |||||| ||||||||||||||||| Sbjct 216174 CTTTTCAGGATCTTT-TGCTTCTATCTTCTGGTTGAAGAAGAGAGGTCTCATGCCAGGTT 216116 Query 94901 TCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 | ||||||||| |||||||| | | ||||||||| | ||| || ||||| Sbjct 216115 TGACCTTCTCCAATGAGCTTATTTGCAGAGACGAGGGATTACACACTGACTTTGC 216061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259545989280