Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009525.1_202016-02-08]
172 sequences; 9,356,930 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq31 131 2e-25
seq27 100 3e-16
>seq31
Length=271146
Score = 131 bits (144), Expect = 2e-25
Identities = 389/600 (65%), Gaps = 0/600 (0%)
Strand=Plus/Minus
Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177
||||| || || ||||||| ||||| || ||| | | |||| || || || ||
Sbjct 89582 ATGCGTGTTGCTATCGGCATTCATGGTGATGACATTGCAAGAGTTATTGAAACTTATAAC 89523
Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237
| ||||| ||||||| ||||| || || | || || || || ||||| |||||
Sbjct 89522 TTTATGAGTCAGAAGTATTTCACTCATGCCTCTCCTACTCTGTTTAACGCTGGTACCCCT 89463
Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297
|||| || ||||| |||||| |||| || ||| ||||||| ||||| |||||
Sbjct 89462 CACCCACAAATGTCATCATGTTTCTTAGTTGCCATGCGGGATGACTCAATTGAAGGCATT 89403
Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357
||||| || | ||||| || || |||||||| | || || || || | |||
Sbjct 89402 TACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAACTGCTGGTGGAATTGGTTTGCAC 89343
Query 19358 TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGT 19417
||||| || | | || | || ||| || ||||| | | |||
Sbjct 89342 ATTCATAATATTCGTGCCACAGGATCCTACATTGCTGGTACTAACGGTACTTCGAATGGT 89283
Query 19418 ATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGC 19477
|| | |||||| | | |||||||||||||| || | || || |||| || || |
Sbjct 89282 ATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCGTTATGTTGACCAAGGTGGTAAC 89223
Query 19478 AAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTC 19537
||||| || | || || | ||| | ||||||||||| || ||| || | | |||
Sbjct 89222 AAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATGGCATGCCGACATCTTTGCCTTC 89163
Query 19538 CTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCC 19597
| || | || |||||| ||| | |||||||| | | | ||| | ||| | ||
Sbjct 89162 ATTGATATTCGTAAGAACCATGGTAAAGAGGAGATCAGAGCTAGAGACTTATTCCCCGCT 89103
Query 19598 TTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATG 19657
|||||||| || || || |||||| | | || || || | | || ||| |||| |
Sbjct 89102 TTGTGGATCCCTGATCTGTTCATGAAAAGAGTAGAACAGAATGGCGATTGGACCCTGTTC 89043
Query 19658 TGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTAC 19717
| || ||| |||||||| |||||||||| || || | || | || ||||||
Sbjct 89042 TCTCCAAGTGAAGCTCCTGGCCTTGCCGACGTCTATGGAGATGAATTTGAGGAATTGTAC 88983
>seq27
Length=543458
Score = 100 bits (110), Expect = 3e-16
Identities = 202/292 (69%), Gaps = 7/292 (2%)
Strand=Plus/Minus
Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885
|| ||||||||||| ||||| | |||| |||| | |||| ||||| |||||
Sbjct 216368 ATTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCAAAGATCCAAAAGAGTCT 216309
Query 59886 GCTGGTCTGTTCCGTGCCATAGAGA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944
| |||||| |||||| |||| | | || | | | ||| |||| || || |||||
Sbjct 216308 GAATTCCTGTTCAATGCCATCGAGACCATTCCATGTA-TCAAAGAAAAGGCTGACTGGGC 216250
Query 59945 CATGCAGTGGATGAGTCCTG--GA-GCATCATTTGCACAACGTCTCATAGCTTTTGCATG 60001
|||| ||||| | || || |||| || || ||||| | | || || || ||
Sbjct 216249 CATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTTTGGTTGCCTTCGC-TG 216191
Query 60002 C-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTG 60060
| || || || |||||||| || || || || | |||| |||||| | || ||| | |
Sbjct 216190 CTGTTGAGGGTATCTTCTTTTCAGGATCTTTTGCTTCTATCTTCTGGTTGAAGAAGAGAG 216131
Query 60061 GCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112
| |||||||| || ||| |||||||| ||||| |||| | | ||||||||
Sbjct 216130 GTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAGACGAGGG 216079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548523620671680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |