Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900009525.1_202016-02-08]
172 sequences; 9,356,930 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq12 152 1e-31
seq22 143 6e-29
seq21 143 6e-29
seq118 102 2e-16
seq123 95.1 3e-14
seq130 93.3 1e-13
seq64 93.3 1e-13
seq4 87.8 4e-12
>seq12
Length=252128
Score = 152 bits (168), Expect = 1e-31
Identities = 165/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
|||||| || ||||| | ||| || || || |||| ||||| || | || |||||| ||
Sbjct 86106 TCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACC 86047
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| || ||||| ||||| || || | ||||||||||| || ||||| ||||||||
Sbjct 86046 GTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTT 85987
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||| ||||| ||| ||| ||||||||||| |||| || || || || || ||
Sbjct 85986 GTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 85927
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || || || || | ||| | ||||||||
Sbjct 85926 AGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 85888
>seq22
Length=213742
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554
|||||| | || | ||| ||||||||||| ||||| | ||||||||| | | ||||||
Sbjct 331 AAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCT 272
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
|| ||||| || ||||| ||||||||||| | ||||| ||||| || |||||||||||
Sbjct 271 ACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTC 212
Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
||||||||| ||||| || || || || || ||||| | || || || | ||
Sbjct 211 CTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGT 152
Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| ||||| || || | ||| || | ||| | |||||
Sbjct 151 GATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 113
>seq21
Length=97381
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||| || || | |||||| |||||||| ||||||| |||||||| | | |||||| ||
Sbjct 97291 TCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACC 97232
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| || ||||| ||||| || || | ||||| ||||| || ||||||||||||||
Sbjct 97231 GTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTT 97172
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||||| ||||| || ||| || || |||||||| | ||||| || | |||||
Sbjct 97171 ATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGAT 97112
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || | ||||| | || | ||||||||
Sbjct 97111 AGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 97073
>seq118
Length=210
Score = 102 bits (112), Expect = 2e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784
|| || ||| ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||
Sbjct 49 ATGTCAAGGCCTGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 108
Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844
| | | |||||| || ||||||||||| |||||||| |||| | | |||| |||
Sbjct 109 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTT-ACCTTGCGACCGTACTCCCCAGGCGGA 167
Query 7845 -ATATTTACGCGTTAGCT 7861
| || |||||||||||
Sbjct 168 GAACTTAACGCGTTAGCT 185
>seq123
Length=186
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/139 (76%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784
|| || || || |||||| ||||| ||||| ||| |||||||| |||| ||||||||||
Sbjct 48 ATGTCAAGAGTAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACAACATGCTCCACCGCT 107
Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844
| | | | |||||| || ||||||||||| |||||||| |||| | | |||| ||
Sbjct 108 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAGCCTTGCGGCCGTACTCCCCAGGCGGT 167
Query 7845 ATATTT--ACGCGTTAGCT 7861
| || ||||||||||
Sbjct 168 CTCCTTCATCGCGTTAGCT 186
>seq130
Length=170
Score = 93.3 bits (102), Expect = 1e-13
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784
|| || |||| ||||||| |||| ||||| || ||||||||||||| ||||||||||
Sbjct 52 ATGTCAAGGGCTGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCT 111
Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843
| | | | |||||| || ||||||||||||| |||||| |||| | | |||| ||
Sbjct 112 TGTGCGGGCCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGG 170
>seq64
Length=6036
Score = 93.3 bits (102), Expect = 1e-13
Identities = 192/283 (68%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGATTAT 7502
||||| || ||||||| || | ||| ||||| ||| | ||| | ||| | || |
Sbjct 216 TTATACTTTATATTTGCATTATTCTGTGG-ATTATTAGGATCAATAATGTCTTTAATATT 274
Query 7503 AAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAA 7562
||| ||||||||| | ||||| ||| |||||||| | ||||| ||| | | |||
Sbjct 275 AAGATTAGAATTATCAGCTCCTGGTAACCAAATATTAATGGGTAACCATCAATTATTCAA 334
Query 7563 CGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622
|| | || || ||||| | | ||| | |||||||| || ||||| | | ||
Sbjct 335 TGTAGTAGCAACAGCACATGCTGTATTAATGGTATTCTTTTTAGTAATGCCAGCTGCAAT 394
Query 7623 AGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCC 7682
||| ||| || |||| | | ||||||||||| ||||| ||||||| | ||| |
Sbjct 395 AGGATTTTTTGGTAATTATCTATTACCTTTAATGATAGGTGCAAGTGATATGTCATTTGC 454
Query 7683 AAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725
|| | || ||||| ||||||||| |||| ||| | |||
Sbjct 455 TAGATTAAATAATATTTCATTTTGATTATTACCACCTGCTTTA 497
>seq4
Length=489146
Score = 87.8 bits (96), Expect = 4e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| |||||||||||||||||||| || || || || || ||||||||||| ||||||||
Sbjct 361239 GAAAATTTGACCATCAGTAATAGAAATGACGTTGGTTGGAATATAAGCAGAGACATCACC 361180
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580
|||| || || | || || || || || | || |||||||| || ||
Sbjct 361179 ACCTTGGGTCTCAATGACTGGCAAAGCGGTCAAAGAACCACCACCCAATTT 361129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192528571959368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |