Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900010155.1_202016-02-08] 143 sequences; 9,353,174 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq35 194 4e-44 seq14 168 2e-36 seq27 163 7e-35 seq4 156 1e-32 seq26 152 1e-31 seq7 89.7 1e-12 >seq35 Length=421902 Score = 194 bits (214), Expect = 4e-44 Identities = 394/578 (68%), Gaps = 8/578 (1%) Strand=Plus/Minus Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 ||||| ||| |||||||| ||||||| ||||| |||||||||| || ||| |||| Sbjct 102596 GATATCTGGCAAATGTACAAGCAGGCCGAAGCTTCCTTTTGGACTGCTGAGGAAATAGAC 102537 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATA 268846 ||| | | || || || ||||| ||| | ||| | || |||| | || || Sbjct 102536 CTGGGTAAGGATTTGCATGACTGGAATAATCGTATGAACGATAATGAAAAATTCTTCATC 102477 Query 268847 TCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG 268906 || | ||||| || ||||| | ||| ||||| || || ||||| | || || Sbjct 102476 TCGAGAGTCCTTGCCTTCTTTGCTGCCTCTGACGGTATTGTCAATGAAAACTTGGTGGAA 102417 Query 268907 AAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCT 268966 || ||| || ||||| || |||| ||||| | ||| |||||||| |||||||| Sbjct 102416 AATTTCAGTGCTGAGGTTCAACTTCCCGAAGCAAAATGCTTTTACGGTTTCCAGATCATG 102357 Query 268967 ATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAAC 269026 || || || ||||| || |||| ||| | | || |||||||| || | ||| Sbjct 102356 ATGGAGAACATTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCAAAGATCCA 102297 Query 269027 AACGAAAAGAAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTC 269085 || || || || || | | || |||| | | | ||| | | | |||| | Sbjct 102296 AAAGAGTCTGAATTCCTGTTCAATGCCATCGAGACCATTCCA-TGTATCAAAGAAAAGGC 102238 Query 269086 TGAATGGGCTCTGAAATGGATAAACGATAGCGC-GCCTTA--CGGAGAAAGGTTAGTTGC 269142 ||| ||||| ||| |||||| ||| || || || || ||| | || ||||| Sbjct 102237 TGACTGGGCCATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTTTGGTTGC 102178 Query 269143 TTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAA 269202 || || ||||| || ||||| |||||||| || |||||||| ||||||| |||||||| Sbjct 102177 CTTCGCTGCTGTTGAGGGTATCTTCTTTTCAGGATCTTTTGCTTCTATCTTCTGGTTGAA 102118 Query 269203 GAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGG 269262 ||| ||||| || |||||||| || || ||||| || || | || |||| ||||| || Sbjct 102117 GAAGAGAGGTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAGACGAGGG 102058 Query 269263 TTTACACTGCGACTTCGCTTGTTTATTATTTACTAATT 269300 |||||| ||||| ||||| || ||||| || ||| Sbjct 102057 ATTACACACTGACTTTGCTTGCTTGCTATTTTCTCATT 102020 >seq14 Length=706028 Score = 168 bits (186), Expect = 2e-36 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || || || || ||||| || ||||| || || |||||| Sbjct 166007 ATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCA 166066 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||| ||||| || ||||||||||| | | ||||| |||||| Sbjct 166067 GACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGA 166126 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || |||||||| | || ||||| || | ||| ||| | || Sbjct 166127 GGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCG 166186 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | |||||||||||||| || | || || || || ||||||||||| Sbjct 166187 ACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 166239 >seq27 Length=98127 Score = 163 bits (180), Expect = 7e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || |||| || || || | || | || ||||| || || || || || ||| Sbjct 79 ATACCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCA 138 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||| ||||| || ||||||||||||| | || || |||||| Sbjct 139 GAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGA 198 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| |||||||| | ||| ||||| || | || || | || Sbjct 199 GGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCC 258 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || ||||||||||| || || ||||| ||||| ||||||||||| Sbjct 259 ACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 311 >seq4 Length=489080 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | ||||| || | || || ||||| || || || || || |||||||| Sbjct 409817 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 409876 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| || || | ||| || |||||||| || || | |||||| |||||||| Sbjct 409877 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 409936 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| || || ||||||||||| | || || || || | || ||| || || ||| Sbjct 409937 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACC 409996 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || ||||||||||| ||||| || ||||| || || ||||||||| Sbjct 409997 TCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTTG 410047 >seq26 Length=213780 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || | ||| | || | || ||||| || |||||||| || ||||| Sbjct 213442 CCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAA 213501 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||||||||||||||| ||||| || ||||| || || | | || || |||||||| Sbjct 213502 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 213561 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || |||||||| | ||| || || || | ||||| | |||||| Sbjct 213562 ATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACC 213621 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||||||||| || || || || || |||||||| Sbjct 213622 TCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213668 >seq7 Length=591225 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 165098 GATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAGCTA 165157 ||||||||||||||| |||||||| | | |||||||||||||| |||||||| Sbjct 371959 GATAAGGATGAATGGTTAACTTGGAAGGCCAGAACTGATCCTGTTTTACACATAGAGCTG 371900 Query 165158 AGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGATA 165217 ||||||||||||||||| | || | ||||| || || |||| | || || || || Sbjct 371899 AGAAGATGGGCAGATATTCTAGTGGTTGCACCTTTGACCTCAAATACATTTGCCAAAATC 371840 Query 165218 GCTAACGGTATCTGTAATAACTTGTTAAC 165246 ||| || | ||| | || ||||| || Sbjct 371839 GCTCTAGGGCTGTGTGACAATTTGTTGAC 371811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396290422244