Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900010155.1_202016-02-08] 143 sequences; 9,353,174 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq18 248 2e-60 seq4 89.7 1e-12 >seq18 Length=271163 Score = 248 bits (274), Expect = 2e-60 Identities = 539/801 (67%), Gaps = 7/801 (1%) Strand=Plus/Plus Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||||||||||||| || || | |||||||| || || |||||||| |||| ||| | Sbjct 181544 GAACGTCCTCAACACTTGATTATGCGTGTTGCTATCGGCATTCATGGTGATGACATTGCA 181603 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 ||||||||| |||| | | | ||| | ||| | | |||||| ||||||| Sbjct 181604 AGAGTTATTGAAACTTATAACTTTATGAGTCAGAAGTATTTCACTCATGCCTCTCCTACT 181663 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTAA 110542 || |||||||| || || | |||| || | || || |||||| | | || Sbjct 181664 CTGTTTAACGCTGGTACCCCTCACCCACAAATGTCATCATG-TTTCTTAGTTGCCATGCG 181722 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 ||||| || |||||||| ||||| ||| || | || ||| |||| | || || |||| Sbjct 181723 GGATGACTCAATTGAAGGCATTTACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAAC 181782 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| ||||||||| | ||| ||||| ||||||| | | |||| | | || || Sbjct 181783 TGCTGGTGGAATTGGTTTGCACATTCATAATATTCGTGCCACAGGATCCTACATTGCTGG 181842 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| |||| | ||| || |||||||| | || ||||||||| ||||||| Sbjct 181843 TACTAACGGTACTTCGAATGGTATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCG 181902 Query 110723 ATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 ||||| | ||||||||||| | | ||| |||||||| | || | || || || Sbjct 181903 TTATGTTGACCAAGGTGGTAACAAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATG 181962 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 |||| | || || |||| ||| | || ||||||| || || || || || || Sbjct 181963 GCATGCCGACATCTTTGCCTTCATTGATATTCGTAAGAACCATGGTAAAGAGGAGATCAG 182022 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 ||| | || ||||| || ||||||| | ||| | ||||||||| | || || | Sbjct 182023 AGCTAGAGACTTATTCCCCGCTTTGTGGATCCCTGATCTGTTCATGAAAAGAGTAGAACA 182082 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959 |||||| ||| | || | | ||| | ||||||| || | || || ||||| Sbjct 182083 GAATGGCGATTGGACCCTGTTCTCTCCAAGTGAAGCTCCTGGCCTTGCCGACGTCTATGG 182142 Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAA 111018 | | || ||||| || | ||||||| ||| ||||| ||||| | | ||||| | Sbjct 182143 AGATGAATTTGAGGAATTGTACGAAAGATACGAAAAGGAAGGTCGTGGAAGACAAAC-CA 182201 Query 111019 TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078 | ||| ||| | ||||||| | |||||||| ||||| |||||||| ||||| | Sbjct 182202 TCAAAGCCCAAAAGCTTTGGTACGCCATCCTTGAGGCACAAACAGAAACTGGTACTCCAT 182261 Query 111079 ATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTA 111138 || ||||||| ||| | ||| ||| |||| || | ||| || || |||| Sbjct 182262 TCATGCTGTATAAGGATGCTTGTAACAAAAAAACTAACCAGAAGAACTTGGGTGTCATTA 182321 Query 111139 AGTCTAGTAATTTGTGCTGTG 111159 | || ||| | ||||||| Sbjct 182322 AATCCTCTAACCTTTGCTGTG 182342 >seq4 Length=489080 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 ||||| ||| || ||||| || || || || | ||||| ||| | ||||||||| Sbjct 113041 AGACACCTGATGGATGATGATCCTGTCCTTTTTAACCGTCAACCGTCATTACATAAAATG 113100 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 || |||||||| |||| |||||||||| | | | || ||| || ||||| || | Sbjct 113101 TCCATGATGGCACATAGAGTCAAAGTAATGCCCTACTCTACTTTTAGACTAAATTTATCT 113160 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | || || ||||| ||||| || || |||||||||||| | || || || ||| Sbjct 113161 GTTACATCACCGTACAATGCTGATTTCGACGGTGATGAAATGAATTTACACGTTCCACAA 113220 Query 305486 TC 305487 || Sbjct 113221 TC 113222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186810625536423