Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900013415.1_202016-02-08] 223 sequences; 9,369,803 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq43 141 1e-29 seq30 132 8e-27 >seq43 Length=75330 Score = 141 bits (156), Expect = 1e-29 Identities = 196/269 (73%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| | | ||| |||| |||| ||||| ||||| ||||| |||||||||| Sbjct 66747 CGCTAAGCGTCACAGAAAGAT-TCTTAGAGACAACATTCAAGGTATCACAAAGCCAGCTA 66689 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || | | |||| | | ||||| || || ||| | |||| || | ||||| ||| Sbjct 66688 TCAGAAGATTGGCCAGAAGAGGTGGTGTTAAACGTATTTCTGCTTTAATTTATGAGGAGG 66629 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACC 16609 |||| | ||||||||||| ||| | | | ||| ||| |||||| || || || || Sbjct 66628 TTCGAGCTGTTTTGAAGACTTTCTTGGAAAACGTGATCAGAGATGCTGTTACA-TACACT 66570 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 |||||||| || | ||||| || || || ||||| | |||||||| |||| | ||| Sbjct 66569 GAGCACGCCAAGAGGAAGACCGTGACATCATTGGATGTTGTCTATGCCCTGAAGAGACAA 66510 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 || |||| | |||||||| ||| |||| Sbjct 66509 GGACGTACTTTGTATGGTTTCGGAGGTTA 66481 >seq30 Length=475869 Score = 132 bits (146), Expect = 8e-27 Identities = 191/267 (72%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| | | ||| |||| |||| ||||| ||||| ||||| ||||||||||| Sbjct 94992 GCTAAGCGTCACAGAAAGAT-TCTTAGAGACAACATTCAAGGTATCACAAAGCCAGCTAT 94934 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | |||| | | ||||| || |||||| | || | ||| |||| ||||| | Sbjct 94933 CAGAAGATTGGCCAGAAGAGGTGGTGTTAAGCGTATTTCCGCTTTGATCTACGAAGAAGT 94874 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| |||||| ||| | ||| ||| || |||||| | || || || Sbjct 94873 CAGAGCTGTGCTGAAGACTTTCTTAGAGAACGTCATTAGAGATGCTGTTACTTACACTGA 94814 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | |||||||| || || ||||| ||||||| || |||||| | ||||| Sbjct 94813 GCATGCCAAGAGAAAGACTGTTACTTCTCTGGATGTCGTCTACGCTTTGAAAAGACAAGG 94754 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | |||||||| ||| |||| Sbjct 94753 ACGTACCTTGTATGGTTTCGGAGGTTA 94727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074996109539