Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016195.1_202016-02-08] 129 sequences; 9,355,550 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq32 156 1e-32 seq9 134 3e-26 seq114 111 4e-19 seq113 111 4e-19 seq13 104 6e-17 seq21 84.2 5e-11 >seq32 Length=251920 Score = 156 bits (172), Expect = 1e-32 Identities = 170/225 (76%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | ||| | ||| ||||||||||||| ||||||||||| |||||| || || Sbjct 19985 TCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACC 20044 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| |||| ||||| || || ||||| |||||||| ||||| ||| |||||| || Sbjct 20045 ATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTT 20104 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||||||||| ||| ||| || | ||||| | | || || ||||| ||||| Sbjct 20105 GTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGAT 20164 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638 |||||||| || || || || || |||||||| |||||| || Sbjct 20165 AGTCTTACCGGTAAGGGTCTTTACGAAAATTTG---CATTTTGGC 20206 >seq9 Length=658273 Score = 134 bits (148), Expect = 3e-26 Identities = 167/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 |||||| || ||||| | ||| |||||||| |||| ||||||||||| || ||| || || Sbjct 572174 TCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACC 572233 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| ||||| || || || || | ||| || ||||| ||| ||||||||| Sbjct 572234 GTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTT 572293 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || |||||||| ||| || |||| |||||| | | || || ||||| || || Sbjct 572294 GTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 572353 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCTT 199641 |||||||| || | || || || ||||| || |||||| | ||| Sbjct 572354 AGTCTTACCGGTTAAGGTCTTGACGAAAATCTG---CATTTTTGTCTT 572398 >seq114 Length=174 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| | || | ||||||||| || |||||||||| ||||||||||| | ||| || Sbjct 152 AGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTA 93 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||| ||||| || |||||||| | ||| |||||||| ||| ||| ||||| Sbjct 92 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCC 33 Query 199532 CGCTCCTGAATCTT 199545 || |||||||| Sbjct 32 TTGTCTTGAATCTT 19 >seq113 Length=174 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| | || | ||||||||| || |||||||||| ||||||||||| | ||| || Sbjct 152 AGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTA 93 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||| ||||| || |||||||| | ||| |||||||| ||| ||| ||||| Sbjct 92 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCC 33 Query 199532 CGCTCCTGAATCTT 199545 || |||||||| Sbjct 32 TTGTCTTGAATCTT 19 >seq13 Length=213781 Score = 104 bits (114), Expect = 6e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | |||||| || || ||||| |||| ||||||||||| | ||| || || Sbjct 213646 TCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACC 213705 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| ||||| || |||||||| | ||| |||||||| ||| ||| ||||| Sbjct 213706 ATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTT 213765 Query 199534 CTCCTGAATCTT 199545 || |||||||| Sbjct 213766 GTCTTGAATCTT 213777 >seq21 Length=271161 Score = 84.2 bits (92), Expect = 5e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827 || ||||| || | ||||| || ||||| || | ||| ||| | | ||| || | Sbjct 182279 GCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGCGTAC 182220 Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887 ||||| | ||||||||| | ||| ||| | | ||||| ||||||||||| || || Sbjct 182219 CAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTCGTAC 182160 Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947 | || || || || | || || | ||| |||| || |||||||| | ||| | || Sbjct 182159 AATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTTGGAGAGAAC 182100 Query 167948 AGACTCCAATTTCCA-TCGGTCTCGACCCTCTTCATGAAGAGGTC 167991 || |||||| ||| || || || || || |||||||| || || Sbjct 182099 AGGGTCCAATCGCCATTCTGT-TCTACTCTTTTCATGAACAGATC 182056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919651463643