Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016195.1_202016-02-08]
129 sequences; 9,355,550 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq13 140 6e-28
seq14 131 3e-25
seq9 113 9e-20
seq32 96.9 7e-15
seq113 91.5 3e-13
seq114 89.7 1e-12
>seq13
Length=213781
Score = 140 bits (154), Expect = 6e-28
Identities = 170/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367
|||||||||||| | |||||| || || | ||| | | |||| || ||||| |||||||
Sbjct 213406 ACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGA-ATATTGTAATCAG 213464
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| | |||| | || |||| ||| |||||||| ||||| || | || || ||||| |
Sbjct 213465 AAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 213524
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| || ||||| || ||||| || ||| ||| || ||| |||| |||||| || ||||
Sbjct 213525 GAATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTA 213584
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || ||||| || || |||||||||| || || | || ||||||||
Sbjct 213585 CCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213633
>seq14
Length=98111
Score = 131 bits (144), Expect = 3e-25
Identities = 143/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || |||||||| | |||| | || |||| ||| ||||||||||| ||||| |
Sbjct 112 GATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACG 171
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
|| || ||||| || || ||||| |||||||| || || ||| |||||| ||||
Sbjct 172 TTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGT 231
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||||| || || || || ||||| || || ||||| |||| ||||||| ||| |||||
Sbjct 232 GTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTG 291
Query 192534 CATTTTATTA 192543
|||||| |||
Sbjct 292 CATTTTTTTA 301
>seq9
Length=658273
Score = 113 bits (124), Expect = 9e-20
Identities = 167/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362
||| ||||||||||| | | | || | || ||||||| ||| || ||| || ||
Sbjct 572156 AATGATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTA 572215
Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422
||||| | |||| | || |||| ||| ||||||||||| || || | ||||| ||
Sbjct 572216 GTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTC 572275
Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482
||| || |||||||| || ||||| || || || ||||| || | || || ||
Sbjct 572276 AGGAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGA 572335
Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| ||||| | ||||| || ||||| ||||| || || | || |||||||||||
Sbjct 572336 CTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 572392
>seq32
Length=251920
Score = 96.9 bits (106), Expect = 7e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||||||||| | | | || || || ||||||| ||| || ||| || || |||||
Sbjct 19973 ACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGA 20032
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| |||| |||| |||||||| |||||||||||||| | | |||||| ||||| ||
Sbjct 20033 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 20092
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||| || || || || || || || || || |||| || || || || ||
Sbjct 20093 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCAC 20152
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| | || || || ||||| || | || || | || || ||||||||
Sbjct 20153 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 20203
>seq113
Length=174
Score = 91.5 bits (100), Expect = 3e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| || | ||| || || || | ||||| || || ||| || || |||
Sbjct 164 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 105
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | |||| |||| |||||||| |||||||| ||||| || | || || |||||
Sbjct 104 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 45
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464
|| || ||||| || ||||| || ||| ||||| ||
Sbjct 44 GGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTT 7
>seq114
Length=174
Score = 89.7 bits (98), Expect = 1e-12
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| || | ||| || || || | ||||| || || ||| || || |||
Sbjct 164 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 105
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | |||| |||| |||||||| |||||||| ||||| || | || || |||||
Sbjct 104 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 45
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTA 192453
|| || ||||| || ||||| || |||
Sbjct 44 GGAATACCTTCCTTGTCTTGAATCTTA 18
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984478372839150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |