Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016195.1_202016-02-08]
129 sequences; 9,355,550 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq13 167 3e-36
seq32 161 1e-34
seq14 156 5e-33
seq9 140 4e-28
seq114 109 6e-19
seq113 109 6e-19
>seq13
Length=213781
Score = 167 bits (184), Expect = 3e-36
Identities = 178/235 (76%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || |||||||| ||||||||||| ||||||
Sbjct 213633 ATGCAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCA 213574
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| || | || |||| ||||| |||||||| || |||||||| ||||||
Sbjct 213573 GATACTATTGATAACGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 213514
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || || |||||||||||||| || || | | | || || | || || |||
Sbjct 213513 CAACGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAAT 213454
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTT 27640
| |||||||||||||||||||| | || || | ||| | ||||| || |||
Sbjct 213453 ATTCAAAAGGAATCCACTCTTCACTTGGTATTAAGACTTAGAGGTGGTGAACTTT 213399
Score = 102 bits (112), Expect = 9e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547
|||| ||||| |||||||| || |||||||| |||||||| ||| | || || |||||||
Sbjct 213779 CTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTCGCTGGTA 213720
Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607
||||| | || |||| | | || || | ||||| || |||| ||||||||||| || |
Sbjct 213719 AGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAGAAGGAATCCACCCTCC 213660
Query 27608 A 27608
|
Sbjct 213659 A 213659
>seq32
Length=251920
Score = 161 bits (178), Expect = 1e-34
Identities = 155/199 (78%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| |||||||| |||||||| || | ||||| |||||
Sbjct 20201 AATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 20142
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| || | ||| | || |||||||||||||||||||||||||| |||||
Sbjct 20141 CGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCA 20082
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||||| || ||||||||||||||| | ||||||| | | || | | ||||| ||
Sbjct 20081 ACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAA 20022
Query 27585 TGTCCAAAAGGAATCCACT 27603
|||||||||| || |||
Sbjct 20021 CATCCAAAAGGAGTCTACT 20003
>seq14
Length=98111
Score = 156 bits (172), Expect = 5e-33
Identities = 157/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| || || || || || |||||||| ||||||||||| ||||||
Sbjct 295 AATGCAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCATC 236
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| ||| | || | || ||||| || ||||| || |||||||| |||||
Sbjct 235 AGACACTATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCTCCTGACCA 176
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| ||| |||||||||||||||||||||| || || | | | || || | || || ||
Sbjct 175 GCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAA 116
Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608
|||||||||||||||| || ||
Sbjct 115 CATCCAAAAGGAATCCACCCTCCA 92
>seq9
Length=658273
Score = 140 bits (154), Expect = 4e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || |||||||| | ||||| ||||||||||| | || || |||||
Sbjct 572390 AATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTCCTC 572331
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | ||| | ||| | || ||||| |||||||| ||||||||||| |||||
Sbjct 572330 CGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGACCA 572271
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| | |||||||||||||||||||| || || | | | || || | ||||| ||
Sbjct 572270 ACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTACAA 572211
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614
|||| ||||| || ||| | || || ||
Sbjct 572210 CATCCAGAAGGAGTCTACTTTGCACCTGGT 572181
>seq114
Length=174
Score = 109 bits (120), Expect = 6e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||| |||| ||||| |||||||| || |||||||| |||||||| ||| | || || |||
Sbjct 13 AAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTCGCT 72
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
||||||||| | || |||| | | || || | ||||| || ||||||||||||| |||
Sbjct 73 GGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAAAAGGAATCTACT 132
Query 27604 CTTCA 27608
|| ||
Sbjct 133 CTCCA 137
>seq113
Length=174
Score = 109 bits (120), Expect = 6e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||| |||| ||||| |||||||| || |||||||| |||||||| ||| | || || |||
Sbjct 13 AAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTCGCT 72
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
||||||||| | || |||| | | || || | ||||| || ||||||||||||| |||
Sbjct 73 GGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAAAAGGAATCTACT 132
Query 27604 CTTCA 27608
|| ||
Sbjct 133 CTCCA 137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570309480374480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |