Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016195.1_202016-02-08]
129 sequences; 9,355,550 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq13 174 4e-38
seq14 161 2e-34
seq32 152 1e-31
seq9 147 5e-30
seq114 122 2e-22
seq113 122 2e-22
>seq13
Length=213781
Score = 174 bits (192), Expect = 4e-38
Identities = 170/219 (78%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955
|||||||| || | |||||||||||| || ||||| || || ||||| | ||| || ||
Sbjct 213415 AAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCT 213474
Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015
|| |||||||| ||||| || |||||||| | ||||| ||||||||||||| |||||
Sbjct 213475 ACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTC 213534
Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075
|||||| || ||||| ||| ||||| || || || || || || ||||| |||||
Sbjct 213535 CTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGT 213594
Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| ||||| || || |||||||| || || | ||||||
Sbjct 213595 GATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213633
Score = 116 bits (128), Expect = 9e-21
Identities = 105/132 (80%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
|||||| || | ||| || ||||| || || |||||||| || || | ||| || || ||
Sbjct 213646 TCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACC 213705
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
|||||||| ||||| || |||||||| | ||||| ||||||||||||| ||||||||
Sbjct 213706 ATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTT 213765
Query 211019 GTCCTGGATCTT 211030
||| || |||||
Sbjct 213766 GTCTTGAATCTT 213777
Score = 86.0 bits (94), Expect = 1e-11
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866
|||||||||||||| || ||||| || |||||||| |||||||||| | || || ||
Sbjct 152064 CTTCCAAAGAAGCATGGTAGAGGTGGTCAATCTGCCCTGCGTTTTGCCCGTCTGAGAGAG 152123
Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTT 139896
|| || || ||||||||| | |||||||||
Sbjct 152124 GAGAAAAGACACAACTACGTTAGAAAAGTT 152153
>seq14
Length=98111
Score = 161 bits (178), Expect = 2e-34
Identities = 167/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
|||||| || | ||| || ||||| || ||||||||||| ||||| | ||| || || ||
Sbjct 79 TCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACC 138
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
|||||||| ||||| || || || || | ||||| ||||||||||||| ||||||||
Sbjct 139 GTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTT 198
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
|| || ||||| ||| || || || || ||||| || || ||||| ||||||||
Sbjct 199 ATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGAT 258
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || || || || || ||||| | |||||||||
Sbjct 259 AGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 297
>seq32
Length=251920
Score = 152 bits (168), Expect = 1e-31
Identities = 165/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
||| ||||| | ||| | ||| ||||| ||||||||||| || || | | || || ||
Sbjct 19985 TCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACC 20044
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
||| |||| ||||| || || ||||| || || |||||||||||||||| ||| |||||
Sbjct 20045 ATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTT 20104
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
|||||| ||||| || ||||| || || ||||| || || ||||| | |||||
Sbjct 20105 GTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGAT 20164
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || || || |||||||| || | ||||||||
Sbjct 20165 AGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 20203
>seq9
Length=658273
Score = 147 bits (162), Expect = 5e-30
Identities = 164/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
||| || || ||||| | ||| ||||| || |||||||| || || | || || || ||
Sbjct 572174 TCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACC 572233
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
|||||||| ||||| || || || || | ||||||||||||||||||| |||||||||
Sbjct 572234 GTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTT 572293
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
||| || ||||| || || || ||||||||||| ||| || || || | || ||
Sbjct 572294 GTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 572353
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || || | ||||| || || | |||||||||
Sbjct 572354 AGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 572392
>seq114
Length=174
Score = 122 bits (134), Expect = 2e-22
Identities = 118/152 (78%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956
||||||| || | ||| ||||| || || ||||||||||| || || | ||| || ||
Sbjct 152 AGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTA 93
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
|||||||||| ||||| || |||||||| | ||||| ||||||||||||| ||||||
Sbjct 92 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCC 33
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048
||||| || ||||| || ||||| || ||
Sbjct 32 TTGTCTTGAATCTTAGACTTAACGTTGTCAAT 1
>seq113
Length=174
Score = 122 bits (134), Expect = 2e-22
Identities = 118/152 (78%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956
||||||| || | ||| ||||| || || ||||||||||| || || | ||| || ||
Sbjct 152 AGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTA 93
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
|||||||||| ||||| || |||||||| | ||||| ||||||||||||| ||||||
Sbjct 92 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCC 33
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048
||||| || ||||| || ||||| || ||
Sbjct 32 TTGTCTTGAATCTTAGACTTTACGTTGTCAAT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159150084139085
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |