Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016195.1_202016-02-08]
129 sequences; 9,355,550 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq9 152 1e-31
seq14 143 6e-29
seq13 143 6e-29
seq114 125 2e-23
seq113 125 2e-23
seq66 93.3 1e-13
seq3 87.8 4e-12
>seq9
Length=658273
Score = 152 bits (168), Expect = 1e-31
Identities = 165/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
|||||| || ||||| | ||| || || || |||| ||||| || | || |||||| ||
Sbjct 572174 TCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACC 572233
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| || ||||| ||||| || || | ||||||||||| || ||||| ||||||||
Sbjct 572234 GTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTT 572293
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||| ||||| ||| ||| ||||||||||| |||| || || || || || ||
Sbjct 572294 GTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 572353
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || || || || | ||| | ||||||||
Sbjct 572354 AGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 572392
>seq14
Length=98111
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||| || || | |||||| |||||||| ||||||| |||||||| | | |||||| ||
Sbjct 79 TCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACC 138
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| || ||||| ||||| || || | ||||| ||||| || ||||||||||||||
Sbjct 139 GTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTT 198
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||||| ||||| || ||| || || |||||||| | ||||| || | |||||
Sbjct 199 ATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGAT 258
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || | ||||| | || | ||||||||
Sbjct 259 AGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 297
>seq13
Length=213781
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554
|||||| | || | ||| ||||||||||| ||||| | ||||||||| | | ||||||
Sbjct 213415 AAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCT 213474
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
|| ||||| || ||||| ||||||||||| | ||||| ||||| || |||||||||||
Sbjct 213475 ACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTC 213534
Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
||||||||| ||||| || || || || || ||||| | || || || | ||
Sbjct 213535 CTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGT 213594
Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| ||||| || || | ||| || | ||| | |||||
Sbjct 213595 GATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213633
Score = 122 bits (134), Expect = 2e-22
Identities = 106/132 (80%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||| || || | |||||| |||||||| || |||| ||||| || | | |||||| ||
Sbjct 213646 TCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACC 213705
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||| | ||||| ||||||||||| | ||||| ||||| || ||||||||||||||
Sbjct 213706 ATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTT 213765
Query 225618 GTCTTGGATCTT 225629
|||||| |||||
Sbjct 213766 GTCTTGAATCTT 213777
>seq114
Length=174
Score = 125 bits (138), Expect = 2e-23
Identities = 108/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
||||| | || | ||||||||| ||||| ||||||| ||||| || | | ||||||
Sbjct 152 AGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTA 93
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|||||||| | ||||| ||||||||||| | ||||| ||||| || ||||||||||||
Sbjct 92 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCC 33
Query 225616 TTGTCTTGGATCTT 225629
|||||||| |||||
Sbjct 32 TTGTCTTGAATCTT 19
>seq113
Length=174
Score = 125 bits (138), Expect = 2e-23
Identities = 108/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
||||| | || | ||||||||| ||||| ||||||| ||||| || | | ||||||
Sbjct 152 AGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTA 93
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|||||||| | ||||| ||||||||||| | ||||| ||||| || ||||||||||||
Sbjct 92 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCC 33
Query 225616 TTGTCTTGGATCTT 225629
|||||||| |||||
Sbjct 32 TTGTCTTGAATCTT 19
>seq66
Length=6054
Score = 93.3 bits (102), Expect = 1e-13
Identities = 192/283 (68%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGATTAT 7502
||||| || ||||||| || | ||| ||||| ||| | ||| | ||| | || |
Sbjct 222 TTATACTTTATATTTGCATTATTCTGTGG-ATTATTAGGATCAATAATGTCTTTAATATT 280
Query 7503 AAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAA 7562
||| ||||||||| | ||||| ||| |||||||| | ||||| ||| | | |||
Sbjct 281 AAGATTAGAATTATCAGCTCCTGGTAACCAAATATTAATGGGTAACCATCAATTATTCAA 340
Query 7563 CGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622
|| | || || ||||| | | ||| | |||||||| || ||||| | | ||
Sbjct 341 TGTAGTAGCAACAGCACATGCTGTATTAATGGTATTCTTTTTAGTAATGCCAGCTGCAAT 400
Query 7623 AGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCC 7682
||| ||| || |||| | | ||||||||||| ||||| ||||||| | ||| |
Sbjct 401 AGGATTTTTTGGTAATTATCTATTACCTTTAATGATAGGTGCAAGTGATATGTCATTTGC 460
Query 7683 AAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725
|| | || ||||| ||||||||| |||| ||| | |||
Sbjct 461 TAGATTAAATAATATTTCATTTTGATTATTACCACCTGCTTTA 503
>seq3
Length=389918
Score = 87.8 bits (96), Expect = 4e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| |||||||||||||||||||| || || || || || ||||||||||| ||||||||
Sbjct 262018 GAAAATTTGACCATCAGTAATAGAAATGACGTTGGTTGGAATATAAGCAGAGACATCACC 261959
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580
|||| || || | || || || || || | || |||||||| || ||
Sbjct 261958 ACCTTGGGTCTCAATGACTGGCAAAGCGGTCAAAGAACCACCACCCAATTT 261908
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192529228969526
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |