Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016195.1_202016-02-08] 129 sequences; 9,355,550 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq13 152 1e-31 seq14 149 2e-30 seq32 129 1e-24 seq9 125 2e-23 seq114 114 3e-20 seq113 114 3e-20 >seq13 Length=213781 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || || || ||||| || ||||| || ||||| Sbjct 213630 CAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCAGAT 213571 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| |||||||| ||||| ||||| || ||||| ||||||||| Sbjct 213570 ACTATTGATAACGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAA 213511 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || || ||||| || || |||||| | ||||| || | Sbjct 213510 CGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAATATT 213451 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || || | || || ||||| ||| Sbjct 213450 CAAAAGGAATCCACTCTTCACTTGGTATTAAGACTTAGA 213412 Score = 100 bits (110), Expect = 7e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| ||||| ||||| || ||||| ||||||||||| | |||||||| || || Sbjct 213777 AAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTCGCTGGTAAG 213718 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || | |||||||| || |||||| | || || ||| |||| || ||||| || || || Sbjct 213717 CAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAGAAGGAATCCACCCTCCAC 213658 Query 178125 CTTGTTTTGAGACTCAGA 178142 | ||| | ||| | ||| Sbjct 213657 TTGGTTCTAAGATTAAGA 213640 >seq14 Length=98111 Score = 149 bits (164), Expect = 2e-30 Identities = 165/219 (75%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 |||||| | || ||||| || ||||| || ||||| || || ||||| || ||||||| Sbjct 302 TTAAAAAAATGCAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGG 243 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 | |||||||| || || || |||||| |||||||| || || ||||| || |||| Sbjct 242 AGTCATCAGACACTATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCTC 183 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | ||||||||||| | || || || || || || || ||||| || || |||||| | | Sbjct 182 CTGACCAGCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTG 123 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| ||| ||||||| ||||| || || || |||| || Sbjct 122 ATTACAACATCCAAAAGGAATCCACCCTCCA-CTTGGTT 85 >seq32 Length=251920 Score = 129 bits (142), Expect = 1e-24 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| || || || || || || || |||||| | |||||||| Sbjct 20203 AAAATGC---AAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAG 20147 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || || |||||||| |||||||||||||| || ||||| ||||| Sbjct 20146 TCTTCCGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCT 20087 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| || || || ||||| || || || || | || ||||| || ||| | | || Sbjct 20086 GACCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGAC 20027 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| ||||||| || || || |||| |||| Sbjct 20026 TACAACATCCAAAAGGAGTCTACTTTGCA-CTTG 19994 >seq9 Length=658273 Score = 125 bits (138), Expect = 2e-23 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || | || || || || || ||| | || || || Sbjct 572392 AAAATGC---AGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAG 572336 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| ||||||||||| || ||||| |||||||| ||||| |||||||| ||||| Sbjct 572335 TCCTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCT 572276 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| ||||| | || || || || || || || ||||| || || ||||| | || Sbjct 572275 GACCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGAC 572216 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||| |||| || || || || |||| || ||| ||||| | ||| Sbjct 572215 TACAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGA 572168 >seq114 Length=174 Score = 114 bits (126), Expect = 3e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || ||||| || |||||||| ||||| ||||| || ||||| ||||||||||| Sbjct 1 ATTGACAACGTTAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGT 60 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | |||||||| || || || | |||||||| || |||||| | || || ||| ||||| Sbjct 61 TTGATCTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAA 120 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || || || | ||||| ||||| ||| Sbjct 121 AAGGAATCTACTCTCCACTTGGTTTTAAGACTGAGA 156 >seq113 Length=174 Score = 114 bits (126), Expect = 3e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || ||||| || |||||||| ||||| ||||| || ||||| ||||||||||| Sbjct 1 ATTGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGT 60 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | |||||||| || || || | |||||||| || |||||| | || || ||| ||||| Sbjct 61 TTGATCTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAA 120 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || || || | ||||| ||||| ||| Sbjct 121 AAGGAATCTACTCTCCACTTGGTTTTAAGACTGAGA 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729210458026