Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016385.1_202016-02-08] 145 sequences; 9,349,220 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq27 248 2e-60 seq4 89.7 1e-12 >seq27 Length=401273 Score = 248 bits (274), Expect = 2e-60 Identities = 539/801 (67%), Gaps = 7/801 (1%) Strand=Plus/Minus Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||||||||||||| || || | |||||||| || || |||||||| |||| ||| | Sbjct 219731 GAACGTCCTCAACACTTGATTATGCGTGTTGCTATCGGCATTCATGGTGATGACATTGCA 219672 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 ||||||||| |||| | | | ||| | ||| | | |||||| ||||||| Sbjct 219671 AGAGTTATTGAAACTTATAACTTTATGAGTCAGAAGTATTTCACTCATGCCTCTCCTACT 219612 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTAA 110542 || |||||||| || || | |||| || | || || |||||| | | || Sbjct 219611 CTGTTTAACGCTGGTACCCCTCACCCACAAATGTCATCATG-TTTCTTAGTTGCCATGCG 219553 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 ||||| || |||||||| ||||| ||| || | || ||| |||| | || || |||| Sbjct 219552 GGATGACTCAATTGAAGGCATTTACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAAC 219493 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| ||||||||| | ||| ||||| ||||||| | | |||| | | || || Sbjct 219492 TGCTGGTGGAATTGGTTTGCACATTCATAATATTCGTGCCACAGGATCCTACATTGCTGG 219433 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| |||| | ||| || |||||||| | || ||||||||| ||||||| Sbjct 219432 TACTAACGGTACTTCGAATGGTATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCG 219373 Query 110723 ATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 ||||| | ||||||||||| | | ||| |||||||| | || | || || || Sbjct 219372 TTATGTTGACCAAGGTGGTAACAAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATG 219313 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 |||| | || || |||| ||| | || ||||||| || || || || || || Sbjct 219312 GCATGCCGACATCTTTGCCTTCATTGATATTCGTAAGAACCATGGTAAAGAGGAGATCAG 219253 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 ||| | || ||||| || ||||||| | ||| | ||||||||| | || || | Sbjct 219252 AGCTAGAGACTTATTCCCCGCTTTGTGGATCCCTGATCTGTTCATGAAAAGAGTAGAACA 219193 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959 |||||| ||| | || | | ||| | ||||||| || | || || ||||| Sbjct 219192 GAATGGCGATTGGACCCTGTTCTCTCCAAGTGAAGCTCCTGGCCTTGCCGACGTCTATGG 219133 Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAA 111018 | | || ||||| || | ||||||| ||| ||||| ||||| | | ||||| | Sbjct 219132 AGATGAATTTGAGGAATTGTACGAAAGATACGAAAAGGAAGGTCGTGGAAGACAAAC-CA 219074 Query 111019 TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078 | ||| ||| | ||||||| | |||||||| ||||| |||||||| ||||| | Sbjct 219073 TCAAAGCCCAAAAGCTTTGGTACGCCATCCTTGAGGCACAAACAGAAACTGGTACTCCAT 219014 Query 111079 ATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTA 111138 || ||||||| ||| | ||| ||| |||| || | ||| || || |||| Sbjct 219013 TCATGCTGTATAAGGATGCTTGTAACAAAAAAACTAACCAGAAGAACTTGGGTGTCATTA 218954 Query 111139 AGTCTAGTAATTTGTGCTGTG 111159 | || ||| | ||||||| Sbjct 218953 AATCCTCTAACCTTTGCTGTG 218933 >seq4 Length=417447 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 ||||| ||| || ||||| || || || || | ||||| ||| | ||||||||| Sbjct 41417 AGACACCTGATGGATGATGATCCTGTCCTTTTTAACCGTCAACCGTCATTACATAAAATG 41476 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 || |||||||| |||| |||||||||| | | | || ||| || ||||| || | Sbjct 41477 TCCATGATGGCACATAGAGTCAAAGTAATGCCCTACTCTACTTTTAGACTAAATTTATCT 41536 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | || || ||||| ||||| || || |||||||||||| | || || || ||| Sbjct 41537 GTTACATCACCGTACAATGCTGATTTCGACGGTGATGAAATGAATTTACACGTTCCACAA 41596 Query 305486 TC 305487 || Sbjct 41597 TC 41598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186810595124345