Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016395.1_202016-02-08]
159 sequences; 9,375,731 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq4 109 5e-19
seq12 93.3 4e-14
seq33 91.5 1e-13
seq28 87.8 2e-12
>seq4
Length=641805
Score = 109 bits (120), Expect = 5e-19
Identities = 144/196 (73%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| ||||||||||| || ||| | ||||| | ||| ||||| | |
Sbjct 409897 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCAGCA 409956
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| |||||||||||||| ||||| || || || ||||| ||| | || | || |
Sbjct 409957 AAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTC-CTGAATCTTGGACTTGAC 410015
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||||||| ||||||||||| | || | || ||||| || || || |
Sbjct 410016 GTTG-TCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGTCT 410074
Query 138599 TTACAAAAATCTGCAT 138614
|||| ||||| |||||
Sbjct 410075 TTACGAAAATTTGCAT 410090
>seq12
Length=648601
Score = 93.3 bits (102), Expect = 4e-14
Identities = 173/250 (69%), Gaps = 8/250 (3%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| ||| | || ||| | || | | |||||||| || ||||||||||| |
Sbjct 86184 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 86125
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | ||| || ||||| ||||| | | | || | ||| |||||||| |||||
Sbjct 86124 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 86065
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| | || | || |||| || | |||||||| ||||| |
Sbjct 86064 ATTCCTTCCTTGTC-TTGAATCTTGGACTTGACATTG-TCGATGGTGTCGGAGGACTCGA 86007
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA----TGGCTTAT 138621
| || | || | || ||||| || | || || || |||||||||| || ||| |
Sbjct 86006 CTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTTTGTCTTTT 85947
Query 138622 AATATTATTC 138631
||| ||| ||
Sbjct 85946 AATGTTAGTC 85937
>seq33
Length=97263
Score = 91.5 bits (100), Expect = 1e-13
Identities = 135/189 (71%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 138427 TTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATT 138486
||||| |||||||| || | ||| | ||| || ||||| ||||| | | | |||
Sbjct 1 TTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATT 60
Query 138487 AGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TC 138545
| ||| || ||||| ||||| |||||||| || || ||| | || | ||| | | ||
Sbjct 61 AAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCT-TGAATCTTGGATTTGACATTATC 119
Query 138546 CACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAA 138605
| ||||| | ||||||||||| | || | || ||||| || || ||||| |||||
Sbjct 120 AATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAA 179
Query 138606 AATCTGCAT 138614
|||||||||
Sbjct 180 AATCTGCAT 188
>seq28
Length=213702
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||||||||| ||||| || | ||| | ||| || ||||| ||||| |
Sbjct 213455 GATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCG 213514
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539
|||| | ||| || ||||| ||||| |||||||| ||||| ||| | || | ||| |
Sbjct 213515 AAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTC-TTGAATCTTAGATTTGAC 213573
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | || || | ||||| ||||| | || | || |||||||| ||||| ||
Sbjct 213574 GTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTT 213633
Query 138600 TACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 213634 GACGAAAATCTGCAT 213648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261413678480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |