Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016395.1_202016-02-08] 159 sequences; 9,375,731 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq28 118 1e-21 seq12 107 2e-18 seq33 105 6e-18 seq4 95.1 1e-14 >seq28 Length=213702 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| ||||| ||||| | ||| || || |||| ||| Sbjct 213446 TGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGC 213505 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| ||||||||||| || ||||| ||||| || |||||||| || Sbjct 213506 TTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTA 213565 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || | || || || ||||| || || ||||| | || || || || Sbjct 213566 GATTTGA-CGTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTACCAGT 213624 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || ||||| ||||| Sbjct 213625 TAGAGTCTTGACGAAAATCTGCAT 213648 >seq12 Length=648601 Score = 107 bits (118), Expect = 2e-18 Identities = 308/462 (67%), Gaps = 14/462 (3%) Strand=Plus/Plus Query 123303 GCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAA-AACGCAA 123361 || || |||||||| || ||||||| || |||| ||||| || || || | || | | Sbjct 588119 GCCATTTATCTAGAGCCATGGCACGAAGAAGTGTTTGATTTGTTGAACTTGAGAAAGAAT 588178 Query 123362 CATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTT 123421 || || ||| || | | |||| | ||||| || |||||||| ||| | ||||| | Sbjct 588179 CACGGCAA-GGAGGAGATCAGAGCCAGAGATTTATTCTACGCTTTGTGGATTCCCGACCT 588237 Query 123422 GTTTATGCGACGCGT--AAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGT 123479 |||||| | || |||||| | | | |||| ||| | ||| | || Sbjct 588238 TTTTATGGAAAAAGTCGAAAAGA--ATGAGGACTGGTGCCTCTTCAACCCCTTGCA-TGC 588294 Query 123480 CCC-GGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCG 123538 | || |||| || ||||||||| | || || || | || || | |||||| Sbjct 588295 CAAAGGTTTGAATGATGTTTACGGCGAACAATTCAACCTCCTTTATGCTGAGTACGAGAA 588354 Query 123539 CGAAGGCAAAC-AGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAA 123597 ||||| || | ||||| || |||| || | | || | || |||| | || Sbjct 588355 -GAAGGGAATGTATGTTAGAAAGATTCCTGCTCAACAATTATGGAATGCTATTGTAGACG 588413 Query 123598 CACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCA 123657 | ||| | || || || || |||| |||| | || |||||| | |||||||||||| | | Sbjct 588414 CTCAAATTGAGACAGGGACTCCGTTCATGTTGTATAAAGACTCTTGCAACAGGAAATCTA 588473 Query 123658 ATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA-- 123715 | || ||||||||||| |||||| ||||| |||| | |||| |||||| | || || Sbjct 588474 ACCAAAGCAACTTGGGTACAATACAATGTTCTAATTTGTGCTGTGAAATTGTGGAGTACT 588533 Query 123716 CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | | | | || ||| | || |||||||||||||| || || Sbjct 588534 CTTCAAGG--GACCAAATCGCAGTGTGTAATTTGGCCTCCAT 588573 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||| || || |||| || || ||||| ||||| || || || | ||| || Sbjct 86172 CTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCG 86113 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| ||| || || || | ||||| ||||| ||||| || ||||| ||||| || Sbjct 86112 TCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTG 86053 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || |||| || | ||||||||| ||||||||||| | |||| Sbjct 86052 TCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATA 85993 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || || ||||| ||||| Sbjct 85992 GTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 85958 >seq33 Length=97263 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 45153 TTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATC 45212 |||||||| || ||||| | ||| || || |||| ||| || || || | || Sbjct 1 TTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATT 60 Query 45213 AATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCT 45272 || ||||||||||| || ||||| ||||| ||||||||||| || ||||| || Sbjct 61 AAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCA 120 Query 45273 ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAA 45332 | ||||| || ||||| || || ||||| | || || || ||||| ||||| |||||| Sbjct 121 ATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAA 180 Query 45333 ATTTGCAT 45340 || ||||| Sbjct 181 ATCTGCAT 188 >seq4 Length=641805 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || ||||||||||| || || || | ||| || ||| |||||||| Sbjct 409888 TGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGC 409947 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | |||| || || ||||| || ||||| || || || || ||||| || Sbjct 409948 TTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTG 410007 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||||||||| || || | || | || || ||||| Sbjct 410008 GACTTGA-CGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGT 410066 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| ||||||||||| Sbjct 410067 AAGGGTCTTTACGAAAATTTGCAT 410090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002301643640