Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016395.1_202016-02-08] 159 sequences; 9,375,731 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq12 190 4e-43 seq28 161 2e-34 seq33 149 1e-30 seq4 147 4e-30 >seq12 Length=648601 Score = 190 bits (210), Expect = 4e-43 Identities = 186/240 (78%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | |||||| | ||||| |||||| || ||||| || || || |||| Sbjct 86186 TACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAG 86127 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||||||||||||| ||||| || |||||||| || | | |||||| || |||| Sbjct 86126 ACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAG 86067 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||||||||| | || ||||| || || || || | || | Sbjct 86066 GAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGA 86007 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821 ||||||| || || ||||| || || || ||||| || || ||||||||| || | |||| Sbjct 86006 CTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTTTGTCTTTT 85947 >seq28 Length=213702 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||| ||||| ||||| || || ||||| |||||||| ||| ||||||||||||| Sbjct 213440 ACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCC 213499 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||||| ||||| | | ||| || || ||||| || |||||||| |||||| Sbjct 213500 AGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGA 213559 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| | ||| || || ||||| ||||| | ||||| || | ||| || ||||| Sbjct 213560 ATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTA 213619 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||||| || || |||||||| Sbjct 213620 CCAGTTAGAGTCTTGACGAAAATCTGCAT 213648 >seq33 Length=97263 Score = 149 bits (164), Expect = 1e-30 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || || || |||||||| ||| ||||||||||||| ||||| || |||||||| ||| Sbjct 1 TTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATT 60 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | | ||| || || ||||| || |||||||||||||||||||| | ||| ||||| ||| Sbjct 61 AAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCA 120 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || || || | || || || | ||| || ||||| ||||| | || || ||||| Sbjct 121 ATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAA 180 Query 82803 ATCTGCATTATTATA 82817 ||||||||| || || Sbjct 181 ATCTGCATTTTTTTA 195 >seq4 Length=641805 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||||| |||||| || || || || || || ||||| Sbjct 409863 ACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGA 409922 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | ||||||| || || | ||| || ||||||||||| || | ||||| || ||||| Sbjct 409923 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 409982 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||| ||||| || |||||||| | || || || ||||| || || || || || Sbjct 409983 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCAC 410042 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || ||||| || || | |||||||| || || |||||| Sbjct 410043 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATT 410091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825199833901