Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016395.1_202016-02-08]
159 sequences; 9,375,731 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq33 109 4e-19
seq28 105 4e-18
seq12 95.1 8e-15
seq4 84.2 1e-11
>seq33
Length=97263
Score = 109 bits (120), Expect = 4e-19
Identities = 139/189 (74%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621
||||| ||||||||||| || || || | |||| |||| ||| || || ||||||||
Sbjct 1 TTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATT 60
Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681
||||| ||||| || | || | |||||| || || ||| || | || |||| ||
Sbjct 61 AAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTT-GGATTTGACATTATC 119
Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740
| ||||| ||| ||||| |||| ||||| || |||||||||| ||||| |||||
Sbjct 120 AATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAA 179
Query 33741 GATCTGCAT 33749
||||||||
Sbjct 180 AATCTGCAT 188
>seq28
Length=213702
Score = 105 bits (116), Expect = 4e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 33520 TCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCG 33579
||||||||||| | | ||| ||||| || |||||| || ||||| || ||||||||
Sbjct 213419 TCACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCA 213478
Query 33580 GAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGC 33639
|| || || | |||| |||| ||| || || || || |||||||| ||||| || |
Sbjct 213479 GAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 213538
Query 33640 GGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCC 33699
|| | |||||| ||||| ||| || ||| | || | || || ||| ||
Sbjct 213539 GGAATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCT 213598
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| |||| ||||| || ||||| |||| || || || || |||||||||
Sbjct 213599 ACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCATA 213649
>seq12
Length=648601
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||||||| | | |||| || | ||| ||| || || |||||||| || ||
Sbjct 86185 ACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGA 86126
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || | |||| |||| ||| || || |||||||||||||| || || || | ||
Sbjct 86125 CAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGG 86066
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| ||||| ||| || | | |||| ||| | ||||||| || || |
Sbjct 86065 AATTCCTTCCTTGTCTTGAATCTT-GGACTTGACATTGTCGATGGTGTCGGAGGACTCGA 86007
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | || || || ||||| ||||| || || || || ||||||||
Sbjct 86006 CTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 85958
>seq4
Length=641805
Score = 84.2 bits (92), Expect = 1e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||||||||| | | ||||| || | ||| ||| ||||| |||||||| || |
Sbjct 409862 CACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAG 409921
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| | || | | || |||||||| || || ||||| |||| |||||| || || | |
Sbjct 409922 ACAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAG 409981
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | || || ||||| ||| || | | || | ||| | |||||| || |||
Sbjct 409982 GAATTCCCTCCTTGTCCTGAATCTT-GGACTTGACGTTGTCAATAGTGTCGGAAGACTCC 410040
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | ||||| || ||||| || | || ||||| || || |||||
Sbjct 410041 ACCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCAT 410090
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703363033280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |