Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016395.1_202016-02-08] 159 sequences; 9,375,731 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq28 125 4e-24 seq33 118 7e-22 seq12 116 2e-21 seq4 100 2e-16 >seq28 Length=213702 Score = 125 bits (138), Expect = 4e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34477 TCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCT 34536 || || |||||||| | || ||||| || |||||| ||||||||||| || ||||| Sbjct 213419 TCACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCA 213478 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 ||||| |||| ||||||| ||||| ||||| || || || ||||| || ||||| || Sbjct 213479 GAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 213538 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTC 34655 || | || ||||||||| ||| || | ||| ||| || ||| || ||| ||| Sbjct 213539 GGAATACCTTCCTTGTCT-TGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTC 213597 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || ||||| |||| || || || ||||||||||| Sbjct 213598 TACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213648 >seq33 Length=97263 Score = 118 bits (130), Expect = 7e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 ||||| ||||| ||||| ||||| |||| ||||||| ||||| ||||| ||||| ||| Sbjct 1 TTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATT 60 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA- 34637 ||||| || ||||| || || | || ||||| ||| ||||| | ||| || || Sbjct 61 AAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTG-GATTTGACATTATC 119 Query 34638 AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAA 34697 ||| |||||| |||||| || | || || || ||||| |||| ||||| ||||| Sbjct 120 AATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAA 179 Query 34698 AATCTGCATGTT 34709 ||||||||| || Sbjct 180 AATCTGCATTTT 191 >seq12 Length=648601 Score = 116 bits (128), Expect = 2e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || || || |||| ||||||| ||||| ||||| ||||| Sbjct 86149 CTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAA 86090 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || ||||| |||||||| || || | ||| ||||||||| ||||| | || || Sbjct 86089 AATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTTG-GACTTGACAT 86031 Query 34635 TAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || ||||| | ||| ||||||| ||| || || ||||||||||| || || | Sbjct 86030 TGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGA 85971 Query 34694 CAAAAATCTGCATGTT 34709 | ||||||||||| || Sbjct 85970 CGAAAATCTGCATTTT 85955 >seq4 Length=641805 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || | ||| ||||||||| ||||| || || || | |||| | || || Sbjct 409882 ACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCC 409941 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| ||||| ||||| || | |||||||||||| || || | |||||||||||| || Sbjct 409942 AATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTC-CTG 410000 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | || | || ||| | ||| ||||| |||||| |||| ||| || || || Sbjct 410001 AATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTT 410060 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 |||||| | || || || ||||| ||||| ||| Sbjct 410061 ACCGGTAAGGGTCTTTACGAAAATTTGCATTTTG 410094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728990113047