Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016395.1_202016-02-08] 159 sequences; 9,375,731 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq12 152 1e-31 seq28 143 6e-29 seq33 120 7e-22 seq90 96.9 8e-15 seq53 93.3 1e-13 seq103 91.5 4e-13 seq4 87.8 4e-12 >seq12 Length=648601 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 |||||| || ||||| | ||| || || || |||| ||||| || | || |||||| || Sbjct 86173 TCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACC 86114 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| || ||||| ||||| || || | ||||||||||| || ||||| |||||||| Sbjct 86113 GTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTT 86054 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| ||||| ||| ||| ||||||||||| |||| || || || || || || Sbjct 86053 GTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 85994 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || || || | ||| | |||||||| Sbjct 85993 AGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 85955 >seq28 Length=213702 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| | || | ||| ||||||||||| ||||| | ||||||||| | | |||||| Sbjct 213430 AAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCT 213489 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||| || ||||| ||||||||||| | ||||| ||||| || ||||||||||| Sbjct 213490 ACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTC 213549 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||||||| ||||| || || || || || ||||| | || || || | || Sbjct 213550 CTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGT 213609 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||| || || | ||| || | ||| | ||||| Sbjct 213610 GATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213648 >seq33 Length=97263 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| |||||||| | | |||||| || ||||| || ||||| ||||| || || Sbjct 1 TTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATT 60 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||||| ||||| || |||||||||||||| ||||| ||||| || ||| || Sbjct 61 AAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCA 120 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || |||||||| | ||||| || | ||||| ||||| || || | ||||| | || Sbjct 121 ATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAA 180 Query 225706 ACTTGCATTTT 225716 | |||||||| Sbjct 181 ATCTGCATTTT 191 >seq90 Length=367 Score = 96.9 bits (106), Expect = 8e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||| |||| |||||| | | | | Sbjct 354 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCGCCGCTTGTGCGGGCCCC 295 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGG-TGGAATA-TTTACGC 7854 ||||| || |||||||||||| |||||||| |||| | | |||| || || || | || Sbjct 294 CGTCAATTCCTTTGAGTTTTAGCCTTGCGGCCGTACTCCCCAGGCGGGGCTACTTAATGC 235 Query 7855 GTTAGCT 7861 ||||||| Sbjct 234 GTTAGCT 228 >seq53 Length=6069 Score = 93.3 bits (102), Expect = 1e-13 Identities = 192/283 (68%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGATTAT 7502 ||||| || ||||||| || | ||| ||||| ||| | ||| | ||| | || | Sbjct 216 TTATACTTTATATTTGCATTATTCTGTGG-ATTATTAGGATCAATAATGTCTTTAATATT 274 Query 7503 AAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAA 7562 ||| ||||||||| | ||||| ||| |||||||| | ||||| ||| | | ||| Sbjct 275 AAGATTAGAATTATCAGCTCCTGGTAACCAAATATTAATGGGTAACCATCAATTATTCAA 334 Query 7563 CGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622 || | || || ||||| | | ||| | |||||||| || ||||| | | || Sbjct 335 TGTAGTAGCAACAGCACATGCTGTATTAATGGTATTCTTTTTAGTAATGCCAGCTGCAAT 394 Query 7623 AGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCC 7682 ||| ||| || |||| | | ||||||||||| ||||| ||||||| | ||| | Sbjct 395 AGGATTTTTTGGTAATTATCTATTACCTTTAATGATAGGTGCAAGTGATATGTCATTTGC 454 Query 7683 AAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || | || ||||| ||||||||| |||| ||| | ||| Sbjct 455 TAGATTAAATAATATTTCATTTTGATTATTACCACCTGCTTTA 497 >seq103 Length=299 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| | ||| ||| |||||| || ||| |||| |||||| | | | Sbjct 73 GGTAAGGTTCTTCGGGTTGCATCGAATTAAGCCGCATGCTCCGCCGCTTGTGCGGGGACC 132 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGCG 7855 ||||| || |||||||||||| |||||||| |||| | | |||| || ||| || | ||| Sbjct 133 CGTCAATTCCTTTGAGTTTTAGCCTTGCGGCCGTACTCCCCAGGCGGGATACTTAATGCG 192 Query 7856 TTAGCTT 7862 ||||||| Sbjct 193 TTAGCTT 199 >seq4 Length=641805 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||||||||| || || || || || ||||||||||| |||||||| Sbjct 127914 GAAAATTTGACCATCAGTAATAGAAATGACGTTGGTTGGAATATAAGCAGAGACATCACC 127973 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580 |||| || || | || || || || || | || |||||||| || || Sbjct 127974 ACCTTGGGTCTCAATGACTGGCAAAGCGGTCAAAGAACCACCACCCAATTT 128024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528770590346