Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016395.1_202016-02-08] 159 sequences; 9,375,731 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq31 259 4e-64 >seq31 Length=431246 Score = 259 bits (286), Expect = 4e-64 Identities = 584/869 (67%), Gaps = 23/869 (3%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 |||||||| || || |||| |||||||||||| || ||||| || | || ||||| || Sbjct 100584 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTC 100643 Query 4317 TCCATAAAATCAAACGGATTAGTTG-CGTTGTA-ATGTTTTTCACACTTTAGAGCTACAA 4374 ||||| || ||||| ||||| |||| ||||||| | ||||| | |||||||| | Sbjct 100644 TCCATGAAGTCAAATGGATT-GTTGACGTTGTACACCTTTTTGTTGC-CCAGAGCTACCA 100701 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 | | || |||||| || || || | |||||||| ||| | |||||| || || | || Sbjct 100702 GTAGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTA 100761 Query 4435 ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 | ||||| || |||| ||| || || || ||| || || || |||||||| | Sbjct 100762 AGGAGACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGATAA 100821 Query 4495 TATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAA 4554 | | || | | || | | | | |||| ||| | ||| | || || |||| Sbjct 100822 TCTTTTCAACGATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGCAAGCAA 100881 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 | ||| || || || |||||||||| ||| || || || || || || || || |||| Sbjct 100882 AGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCA 100941 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 | | ||||||||| || | ||| || |||| ||||| || || |||||||| || || | Sbjct 100942 TGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCT 101001 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTT---TAATCC 4731 | || || || || || || || || ||||| | || | ||| | ||||| Sbjct 101002 CAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAA---TGCATCGTCATCAGAAATCC 101058 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA-- 4789 || | | ||||||| ||| |||| || | || ||||| || | || || || || Sbjct 101059 ATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACA 101118 Query 4790 -TAATT--TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 |||| ||| ||| ||| |||| || ||||| || || || | | || | Sbjct 101119 GGAATTCAGACTCTTT-----TGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGT 101173 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 || || || || || || || ||||| || |||||||||||| | ||||| | | Sbjct 101174 CTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAG 101233 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 |||||| || || || |||| || |||||||| || || ||||||||| ||| || Sbjct 101234 TTGAACCTCAGCACTGAAATTTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGC 101293 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTC---GTCAGGCTTAAGTTTTTTCCA 5023 ||| || || | || || || ||| | | ||| || | || | || ||||| Sbjct 101294 AAAGAAGGCAAGGACTCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTATTCCA 101353 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 || ||||||| ||| | || | ||| ||| |||||||||| || ||||| || | Sbjct 101354 GTCATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTG 101413 Query 5084 TTTGTACATAGACCAAATATCAGGATACT 5112 |||||||| ||| ||||| | |||| Sbjct 101414 CTTGTACATTTGCCAGATATCGTGGTACT 101442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048772457947