Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08]
164 sequences; 9,359,670 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq3 95.1 8e-15
seq20 91.5 9e-14
>seq3
Length=641798
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200
|||| ||||| || | | ||||| ||||| || ||||| ||||| || ||||| ||||
Sbjct 231945 CACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAG 231886
Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260
||||| | || ||||||||||| ||| ||| || | ||| || ||||| | |
Sbjct 231885 ACAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAG 231826
Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320
| || || || || || |||| || || | | ||| |||||| | | |
Sbjct 231825 GAATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCA 231766
Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
| |||| || || || || || ||||| || ||||||||||||||||| ||
Sbjct 231765 CCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 231714
>seq20
Length=311372
Score = 91.5 bits (100), Expect = 9e-14
Identities = 162/236 (69%), Gaps = 8/236 (3%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| || ||||| | | ||||| || | || || || ||||| || |||||||||||
Sbjct 214070 ACCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGA 214129
Query 33202 CAAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257
| ||||| ||| |||| |||||| ||| ||| ||||||||||||||||| |
Sbjct 214130 AA----GAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAG 214185
Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317
|| || ||||| || || |||| ||| || | | ||| ||||| | |
Sbjct 214186 GAGGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACT 214245
Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373
|| || ||||| || || || || || || ||||| || ||||| ||||| |||
Sbjct 214246 CCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTTT 214301
Score = 89.7 bits (98), Expect = 3e-13
Identities = 161/235 (69%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 33139 TTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATC 33198
|||||| ||||| | | || ||||| || | || || || ||||| |||||||||||
Sbjct 213383 TTCACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATC 213442
Query 33199 AGACAAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGT 33254
||| | ||||| ||| |||| |||||| ||| || || |||||||||||||
Sbjct 213443 AGAAA----GAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGT 213498
Query 33255 CCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314
| | || || ||||| || || |||| ||| || | | ||| || || |
Sbjct 213499 CAGGAGGAATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATG 213558
Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
| || || ||||| || || || || || ||||| || |||||||| |||||
Sbjct 213559 ACTCTACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318776962843272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |