Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08] 164 sequences; 9,359,670 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq22 194 4e-44 seq12 168 2e-36 seq20 163 7e-35 seq3 156 1e-32 seq110 96.9 8e-15 seq1 89.7 1e-12 >seq22 Length=274637 Score = 194 bits (214), Expect = 4e-44 Identities = 394/578 (68%), Gaps = 8/578 (1%) Strand=Plus/Minus Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 ||||| ||| |||||||| ||||||| ||||| |||||||||| || ||| |||| Sbjct 216772 GATATCTGGCAAATGTACAAGCAGGCCGAAGCTTCCTTTTGGACTGCTGAGGAAATAGAC 216713 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATA 268846 ||| | | || || || ||||| ||| | ||| | || |||| | || || Sbjct 216712 CTGGGTAAGGATTTGCATGACTGGAATAATCGTATGAACGATAATGAAAAATTCTTCATC 216653 Query 268847 TCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG 268906 || | ||||| || ||||| | ||| ||||| || || ||||| | || || Sbjct 216652 TCGAGAGTCCTTGCCTTCTTTGCTGCCTCTGACGGTATTGTCAATGAAAACTTGGTGGAA 216593 Query 268907 AAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCT 268966 || ||| || ||||| || |||| ||||| | ||| |||||||| |||||||| Sbjct 216592 AATTTCAGTGCTGAGGTTCAACTTCCCGAAGCAAAATGCTTTTACGGTTTCCAGATCATG 216533 Query 268967 ATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAAC 269026 || || || ||||| || |||| ||| | | || |||||||| || | ||| Sbjct 216532 ATGGAGAACATTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCAAAGATCCA 216473 Query 269027 AACGAAAAGAAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTC 269085 || || || || || | | || |||| | | | ||| | | | |||| | Sbjct 216472 AAAGAGTCTGAATTCCTGTTCAATGCCATCGAGACCATTCCA-TGTATCAAAGAAAAGGC 216414 Query 269086 TGAATGGGCTCTGAAATGGATAAACGATAGCGC-GCCTTA--CGGAGAAAGGTTAGTTGC 269142 ||| ||||| ||| |||||| ||| || || || || ||| | || ||||| Sbjct 216413 TGACTGGGCCATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTTTGGTTGC 216354 Query 269143 TTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAA 269202 || || ||||| || ||||| |||||||| || |||||||| ||||||| |||||||| Sbjct 216353 CTTCGCTGCTGTTGAGGGTATCTTCTTTTCAGGATCTTTTGCTTCTATCTTCTGGTTGAA 216294 Query 269203 GAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGG 269262 ||| ||||| || |||||||| || || ||||| || || | || |||| ||||| || Sbjct 216293 GAAGAGAGGTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAGACGAGGG 216234 Query 269263 TTTACACTGCGACTTCGCTTGTTTATTATTTACTAATT 269300 |||||| ||||| ||||| || ||||| || ||| Sbjct 216233 ATTACACACTGACTTTGCTTGCTTGCTATTTTCTCATT 216196 >seq12 Length=1006240 Score = 168 bits (186), Expect = 2e-36 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || || || || ||||| || ||||| || || |||||| Sbjct 542937 ATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCA 542996 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||| ||||| || ||||||||||| | | ||||| |||||| Sbjct 542997 GACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGA 543056 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || |||||||| | || ||||| || | ||| ||| | || Sbjct 543057 GGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCG 543116 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | |||||||||||||| || | || || || || ||||||||||| Sbjct 543117 ACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 543169 >seq20 Length=311372 Score = 163 bits (180), Expect = 7e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || |||| || || || | || | || ||||| || || || || || ||| Sbjct 214068 ATACCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCA 214127 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||| ||||| || ||||||||||||| | || || |||||| Sbjct 214128 GAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGA 214187 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| |||||||| | ||| ||||| || | || || | || Sbjct 214188 GGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCC 214247 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || ||||||||||| || || ||||| ||||| ||||||||||| Sbjct 214248 ACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 214300 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || | ||| | || | || ||||| || |||||||| || ||||| Sbjct 213387 CCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAA 213446 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||||||||||||||| ||||| || ||||| || || | | || || |||||||| Sbjct 213447 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 213506 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || |||||||| | ||| || || || | ||||| | |||||| Sbjct 213507 ATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACC 213566 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||||||||| || || || || || |||||||| Sbjct 213567 TCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213613 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || || || | || | || ||||| ||||| || || |||||| Sbjct 213612 ATACCACCTCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 213671 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| ||||| ||||| || |||||||| || || | || ||||||||| Sbjct 213672 GAAAGAGTTCTACCATCTTCCAGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGA 213731 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||| | ||||| || || | || || | || Sbjct 213732 GGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCC 213791 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || |||||||||||||| | || || || || |||||||| Sbjct 213792 ACTTCAAGAGTGATAGTCTTACCAGTTAAAGTCTTGACGAAAATCTGCAT 213841 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | || | || | |||||||| || || || || |||||| Sbjct 213840 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 213899 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| ||||| | ||| || ||||| || || | | || || |||||| Sbjct 213900 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 213959 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||| | || || || || | |||||| | |||| Sbjct 213960 GGAATACCTTCCTTGTCTTGAATCTTAGACTTAACGTTGTCAATGGTATCCGACGATTCT 214019 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || |||||||||||||| || | || || || || |||||||| Sbjct 214020 ACCTCAAGGGTAATAGTCTTACCTGTCAAGGTCTTGACGAAGATCTGCAT 214069 >seq3 Length=641798 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | ||||| || | || || ||||| || || || || || |||||||| Sbjct 231943 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 231884 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| || || | ||| || |||||||| || || | |||||| |||||||| Sbjct 231883 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 231824 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| || || ||||||||||| | || || || || | || ||| || || ||| Sbjct 231823 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACC 231764 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || ||||||||||| ||||| || ||||| || || ||||||||| Sbjct 231763 TCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTTG 231713 >seq110 Length=228 Score = 96.9 bits (106), Expect = 8e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | || | || | |||||||| || || || || |||||| Sbjct 160 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 101 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||| ||||| | ||| || ||||| || || | | || || |||||| Sbjct 100 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 41 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 || || ||||| || || |||||||| | ||||| || Sbjct 40 GGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTT 3 >seq1 Length=591225 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 165098 GATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAGCTA 165157 ||||||||||||||| |||||||| | | |||||||||||||| |||||||| Sbjct 219267 GATAAGGATGAATGGTTAACTTGGAAGGCCAGAACTGATCCTGTTTTACACATAGAGCTG 219326 Query 165158 AGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGATA 165217 ||||||||||||||||| | || | ||||| || || |||| | || || || || Sbjct 219327 AGAAGATGGGCAGATATTCTAGTGGTTGCACCTTTGACCTCAAATACATTTGCCAAAATC 219386 Query 165218 GCTAACGGTATCTGTAATAACTTGTTAAC 165246 ||| || | ||| | || ||||| || Sbjct 219387 GCTCTAGGGCTGTGTGACAATTTGTTGAC 219415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395980624112