Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08]
164 sequences; 9,359,670 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 156 1e-32
seq12 134 3e-26
seq20 132 1e-25
seq110 111 4e-19
seq25 84.2 5e-11
>seq3
Length=641798
Score = 156 bits (172), Expect = 1e-32
Identities = 170/225 (76%), Gaps = 3/225 (1%)
Strand=Plus/Minus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||| ||||| | ||| | ||| ||||||||||||| ||||||||||| |||||| || ||
Sbjct 231932 TCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACC 231873
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||| |||| ||||| || || ||||| |||||||| ||||| ||| |||||| ||
Sbjct 231872 ATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTT 231813
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||||||||| ||| ||| || | ||||| | | || || ||||| |||||
Sbjct 231812 GTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGAT 231753
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638
|||||||| || || || || || |||||||| |||||| ||
Sbjct 231752 AGTCTTACCGGTAAGGGTCTTTACGAAAATTTG---CATTTTGGC 231711
>seq12
Length=1006240
Score = 134 bits (148), Expect = 3e-26
Identities = 167/228 (73%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
|||||| || ||||| | ||| |||||||| |||| ||||||||||| || ||| || ||
Sbjct 542951 TCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACC 543010
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
|||||||| ||||| || || || || | ||| || ||||| ||| |||||||||
Sbjct 543011 GTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTT 543070
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
|| |||||||| ||| || |||| |||||| | | || || ||||| || ||
Sbjct 543071 GTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 543130
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCTT 199641
|||||||| || | || || || ||||| || |||||| | |||
Sbjct 543131 AGTCTTACCGGTTAAGGTCTTGACGAAAATCTG---CATTTTTGTCTT 543175
>seq20
Length=311372
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||| || || | |||||| || || ||||| |||| ||||||||||| | ||| || ||
Sbjct 213626 TCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACC 213685
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||||||||| ||||| || || ||||| ||||| ||||| || ||| ||| |||||
Sbjct 213686 ATCTTCCAGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGAGGAATACCTTCCTT 213745
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
|| |||||||| ||| ||| || | ||||||| || || || || | |||||
Sbjct 213746 GTCTTGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCCACTTCAAGAGTGAT 213805
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||||| || | ||| || || ||||| ||
Sbjct 213806 AGTCTTACCAGTTAAAGTCTTGACGAAAATCTG 213838
Score = 127 bits (140), Expect = 5e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471
||||| | || | ||||||||| || |||||||||| ||||||||||| | ||| ||
Sbjct 213852 AGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTA 213911
Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531
|||||||||| ||||| || |||||||| | ||| |||||||| ||| ||| |||||
Sbjct 213912 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCC 213971
Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591
|| |||||||| ||| ||| || | ||| || | | |||||| || | ||
Sbjct 213972 TTGTCTTGAATCTTAGACTTAACGTTGTCAATGGTATCCGACGATTCTACCTCAAGGGTA 214031
Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| || | || || || || || ||
Sbjct 214032 ATAGTCTTACCTGTCAAGGTCTTGACGAAGATCTG 214066
>seq110
Length=228
Score = 111 bits (122), Expect = 4e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471
||||| | || | ||||||||| || |||||||||| ||||||||||| | ||| ||
Sbjct 148 AGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTA 89
Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531
|||||||||| ||||| || |||||||| | ||| |||||||| ||| ||| |||||
Sbjct 88 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCC 29
Query 199532 CGCTCCTGAATCTT 199545
|| ||||||||
Sbjct 28 TTGTCTTGAATCTT 15
>seq25
Length=524034
Score = 84.2 bits (92), Expect = 5e-11
Identities = 155/225 (69%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827
|| ||||| || | ||||| || ||||| || | ||| ||| | | ||| || |
Sbjct 305046 GCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGCGTAC 304987
Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887
||||| | ||||||||| | ||| ||| | | ||||| ||||||||||| || ||
Sbjct 304986 CAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTCGTAC 304927
Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947
| || || || || | || || | ||| |||| || |||||||| | ||| | ||
Sbjct 304926 AATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTTGGAGAGAAC 304867
Query 167948 AGACTCCAATTTCCA-TCGGTCTCGACCCTCTTCATGAAGAGGTC 167991
|| |||||| ||| || || || || || |||||||| || ||
Sbjct 304866 AGGGTCCAATCGCCATTCTGT-TCTACTCTTTTCATGAACAGATC 304823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178919122790988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |