Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08]
164 sequences; 9,359,670 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq20 194 4e-44
seq12 161 2e-34
seq110 136 9e-27
seq25 100 6e-16
>seq20
Length=311372
Score = 194 bits (214), Expect = 4e-44
Identities = 176/222 (79%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| ||||| ||||| | ||| ||||| || || ||||| || ||||| || | ||||||
Sbjct 213848 TCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGT 213907
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| |||||||| | |||||||| |||||||| | ||||| ||||| |||||||| ||
Sbjct 213908 TCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACC 213967
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| ||||||||||| || ||| ||||| |||||||| ||||| ||| || |||||
Sbjct 213968 TTCCTTGTCTTGAATCTTAGACTTAACGTTGTCAATGGTATCCGACGATTCTACCTCAAG 214027
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| ||||| |||||||| || || ||||| | |||||
Sbjct 214028 GGTAATAGTCTTACCTGTCAAGGTCTTGACGAAGATCTGCAT 214069
Score = 179 bits (198), Expect = 8e-40
Identities = 173/222 (78%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| ||||| || || | |||||||||||| || ||||||||||||||||| | ||||||
Sbjct 213392 TCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGT 213451
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| || ||||| || |||||||| |||||||| | ||||| ||||| |||||||| ||
Sbjct 213452 TCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACC 213511
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| ||||||||||| || |||||||| ||||| || || || || || |||||
Sbjct 213512 TTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAG 213571
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | ||||| || || | ||| || ||||| | |||||
Sbjct 213572 AGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213613
Score = 167 bits (184), Expect = 5e-36
Identities = 170/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| | ||| | ||| | ||| || ||||| || || || || ||||| || | ||||||
Sbjct 213620 TCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGT 213679
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| |||||||| || |||||||| || ||||| || ||||| || || |||||||| ||
Sbjct 213680 TCTACCATCTTCCAGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGAGGAATACC 213739
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| ||||||||||| || ||| ||||| ||||| ||||| || |||||||||||
Sbjct 213740 TTCCTTGTCTTGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCCACTTCAAG 213799
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | ||||| || || ||||| || ||||| | |||||
Sbjct 213800 AGTGATAGTCTTACCAGTTAAAGTCTTGACGAAAATCTGCAT 213841
>seq12
Length=1006240
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| | ||||| ||| ||||| | ||| ||||| || || || ||||| || | |||||
Sbjct 542945 TCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGT 543004
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| || ||||| || |||||||| || || || | ||||||||||| |||||||| ||
Sbjct 543005 TCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCC 543064
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| ||||||||||| || |||||| || || |||||||| || || ||||| |
Sbjct 543065 TTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAA 543124
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATG 195145
||||| ||||| || || || || || ||||| | ||||||| ||
Sbjct 543125 GGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTTTG 543171
>seq110
Length=228
Score = 136 bits (150), Expect = 9e-27
Identities = 120/150 (80%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| ||||| ||||| | ||| ||||| || || ||||| || ||||| || | ||||||
Sbjct 152 TCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGT 93
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| |||||||| | |||||||| |||||||| | ||||| ||||| |||||||| ||
Sbjct 92 TCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACC 33
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTT 195068
||| ||||||||||| || ||| |||||
Sbjct 32 TTCCTTGTCTTGAATCTTAGACTTTACGTT 3
>seq25
Length=524034
Score = 100 bits (110), Expect = 6e-16
Identities = 203/300 (68%), Gaps = 6/300 (2%)
Strand=Plus/Plus
Query 160570 GATGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGT 160629
||| ||||| ||||| | ||| ||| | |||| | ||||| |||||||| |||||
Sbjct 304783 GATCAGAGCTAGAGACTTATTCCCCGCTTTGTGGATCCCTGATCTGTTCATGAAAAGAGT 304842
Query 160630 GAAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGT 160689
|| | ||||| ||||||| ||| |||| ||| | |||||| ||||| |||| || ||
Sbjct 304843 AGAACAGAATGGCGATTGGACCCTGTTCTCTCCAAGTGAAGCTCCTGGCCTTGCCGACGT 304902
Query 160690 TTATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAA 160749
||||| || || ||| | || |||||||||||||| || || | | | | |
Sbjct 304903 CTATGGAGATGAATTTGAGGAATTGTACGAAAGATACGAAAAGGAAGGTCGTGGAAGACA 304962
Query 160750 GGTCGTGAAGGCCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTAT 160809
| | || |||||| | || ||| | |||||||| || ||| || ||||
Sbjct 304963 AACCATCAAAGCCCAAAAGCTTTGGTACGCCATCCTTGAGGCACAAACAGAAACTGGTAC 305022
Query 160810 GCCCTTTATCGCATACAAGGATGCCATCTGTCGC---AAGAGTAACCAGAAGAACTTTGG 160866
|| || || || |||||||| ||| | || | ||||||||||||||| ||
Sbjct 305023 TCCATTCATGCTGTATAAGGATGC---TTGTAACAAAAAAACTAACCAGAAGAACTTGGG 305079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109479268701788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |