Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08]
164 sequences; 9,359,670 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq20 113 3e-20
seq3 104 2e-17
seq12 89.7 4e-13
>seq20
Length=311372
Score = 113 bits (124), Expect = 3e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 48537 TCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCA 48596
|| || || || || | || ||||| || || ||| || ||||||||||||||||||
Sbjct 213384 TCACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCA 213443
Query 48597 GATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTG 48656
|| ||| ||| | |||| |||| |||||||| || || |||| || || || || |
Sbjct 213444 GAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 213503
Query 48657 GGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716
|||| || |||||||| |||||| ||| || | | | || ||||| | |||
Sbjct 213504 GGAATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCT 213563
Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| | || || || || || || | ||| || || |||||||||||
Sbjct 213564 ACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213613
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||||| | | ||||| || || ||| || ||||| || |||||||||||
Sbjct 214071 CCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAA 214130
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| ||| | |||| |||| |||||||| ||||| || | || || || || | |||
Sbjct 214131 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGA 214190
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || ||||| || |||||| ||| ||| | | | || ||||| | |||||||
Sbjct 214191 ATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCACC 214250
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | || || || || || || | ||||| ||||||||||||||
Sbjct 214251 TCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCAT 214297
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || ||| || || || || ||||| ||||| ||| ||| | | || |||
Sbjct 213633 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACCATCTTCC 213692
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||||| ||||| ||||| || || ||||| | |||| || |||||||| |
Sbjct 213693 AGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGA 213752
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| ||||| | | || ||||| | |||||| || | || || || ||
Sbjct 213753 ATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCCACTTCAAGAGTGATAGTCTTA 213812
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| || || |||||||||||
Sbjct 213813 CCAGTTAAAGTCTTGACGAAAATCTGCAT 213841
>seq3
Length=641798
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| ||||| || ||||| ||||| | | ||| | | || ||||| |||||||| |||||
Sbjct 231908 CTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAA 231849
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
||||| |||||||| || | |||| ||||||||||| |||||| || ||
Sbjct 231848 GATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 231789
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | || || || | ||||||||||| || || || || || || | || |||||
Sbjct 231788 GTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTAC 231729
Query 48755 AAAAATCTGCAT 48766
||||| |||||
Sbjct 231728 GAAAATTTGCAT 231717
>seq12
Length=1006240
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || || ||||| ||||| ||| ||| | |||| |||| |||||||| |||||
Sbjct 542975 CTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAA 543034
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| || ||||| || | |||| || |||||||| |||||| || |||
Sbjct 543035 AATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATT 543094
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || | ||| || |||| ||||| || || || || || || || ||
Sbjct 543095 GTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGAC 543154
Query 48755 AAAAATCTGCAT 48766
|||||||||||
Sbjct 543155 GAAAATCTGCAT 543166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380936838600972
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |