Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08] 164 sequences; 9,359,670 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq25 150 9e-32 seq12 111 8e-20 >seq25 Length=524034 Score = 150 bits (166), Expect = 9e-32 Identities = 344/511 (67%), Gaps = 10/511 (2%) Strand=Plus/Minus Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949 ||||| |||| | |||||| |||| || || ||| | | ||| || | ||| || | Sbjct 304877 TTGGAGAGAACAGGGTCCAATCGCCATTCTGTTCTACTCTTTTCATGAACAGATCAGGGA 304818 Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009 |||||| || ||||| ||||| ||||| || || ||||| || || ||||| | Sbjct 304817 TCCACAAAGCGGGGAATAAGTCTCTAGCTCTGATCTCCTCTTTACCATGGTTCTTACGAA 304758 Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069 ||| | ||| |||| || || | |||||||| || || || | |||||| ||| Sbjct 304757 TATCAATGAAGGCAAAGATGTCGGCATGCCATGGCTCCAAGTACAAAGCAAATGCACCAG 304698 Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129 | ||| |||||||| || || || | ||||| | ||||| || ||| ||||| Sbjct 304697 GACGTTTGTTACCACCTTGGTCAACATAACGAGCAGTGTTGTTGAAGACCCTCACCATTG 304638 Query 26130 GAACTAAT-CCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATA 26188 ||| |||| ||| | ||| ||||| || | | ||| | ||||||||| | | |||| Sbjct 304637 GAA-TAATACCATTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAATA 304579 Query 26189 TCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC--TGAAA 26246 | ||| || | ||| ||||||||||| ||| || || ||||| || | ||| Sbjct 304578 TTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAGATTAAAGCACATTCCTTCAAA 304519 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306 |||||| |||| |||| || ||| | ||| | | ||| ||||| || || | Sbjct 304518 --GTATCGTAAATGCCTTCAATTGAGTCATCCCGCATGGCAACTAAGAAACATGATGACA 304461 Query 26307 ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTT 26366 ||| | |||| || || | ||||| | || || | |||||||| |||| ||| Sbjct 304460 TTTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCATGAGTGAAATA--CTT 304403 Query 26367 C--ACTCAAAGCTGTATAAGTTTCAAGAACT 26395 | ||||| | |||||||||||| |||| Sbjct 304402 CTGACTCATAAAGTTATAAGTTTCAATAACT 304372 >seq12 Length=1006240 Score = 111 bits (122), Expect = 8e-20 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 25906 CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAA 25965 ||| || |||| | || ||||| |||||||| | || |||||||||| || || || Sbjct 40854 CCAGTCCTCATTCTTTTCGACTTTTTCCATAAAAAGGTCGGGAATCCACAAAGCGTAGAA 40913 Query 25966 TAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAA 26025 ||||||||| ||||| || || || || |||||||||||| | | | || |||||||| Sbjct 40914 TAAATCTCTGGCTCTGATCTCCTCCTTGCCGTGATTCTTTCTCAAGTTCAACAAATCAAA 40973 Query 26026 AATATCTGAGTGCCATGGTTCTAAATAGATAGCAAA 26061 | ||| ||||||||| |||| ||| || ||||| Sbjct 40974 CACTTCTTCGTGCCATGGCTCTAGATAAATGGCAAA 41009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039494236300