Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08] 164 sequences; 9,359,670 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq22 203 5e-47 seq20 96.9 5e-15 >seq22 Length=274637 Score = 203 bits (224), Expect = 5e-47 Identities = 568/856 (66%), Gaps = 24/856 (3%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || |||| ||| || ||| | || |||||||| || || || || |||| || || Sbjct 215919 GCCTTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATG 215978 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATA-ATATTTTTCTTGTATTAATTCGTA 17979 | ||| || ||||||||||| || || || | ||||| ||| | | Sbjct 215979 TTCTCCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTGCCCAGAG-CTAC 216037 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 | || ||| || || || || || ||||| || ||||||| ||| ||||| || || Sbjct 216038 CAGTAGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAG 216097 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 || || ||| ||||| || | | | ||| || ||||| |||| |||| | || Sbjct 216098 TAAGGAGACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGAT 216157 Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATT-ATAATATAATAAAC 18158 || ||| || ||||| || | | ||| | | | | | || ||| || | Sbjct 216158 AATCTTTTCAAC----GATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGC 216213 Query 18159 ACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACC 18218 | ||||| ||||||||||| || || |||||| | || | || || || || || | Sbjct 216214 AAGCAAAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAAC 216273 Query 18219 CGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATA 18278 | ||||| | |||||| || || | ||| || || || || ||| | |||||||| | Sbjct 216274 CTGGCATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGA 216333 Query 18279 TACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGC-AAAACTGTATTTATTGCTCAG 18336 |||||||||| ||| ||||| || | || | |||||| || | || | | | |||| Sbjct 216334 TACCCTCAACAGCA-GCGAAGGCAACCAAACGTTCAGCGAACAATGCA--TCGTCATCAG 216390 Query 18337 -TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 |||||| | ||||| || | | ||||| || || |||| || |||| Sbjct 216391 AAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCAT 216450 Query 18396 TAAACA--AATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 | |||| ||| || ||||| | |||||| || ||||| || || | ||| || || Sbjct 216451 TGAACAGGAAT--TCAGACTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTA 216508 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 | || || || ||| | ||||| ||||| |||| ||||| || | || ||||| Sbjct 216509 AGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGG 216568 Query 18514 ATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | ||||| ||| || | |||| |||| ||||| || ||||| || |||||||||| | Sbjct 216569 AAGTTGAACCTCAGCACTGAAAT-TTTCCACCAAGTTTTCATTGACAATACCGTCAGAGG 216627 Query 18573 ATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA---GATTG 18628 || || || || | || | | | ||||| |||||||||||| || | |||| Sbjct 216628 CAGCAAAGAAGGCAAGGAC-TCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTA 216686 Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688 ||||| |||| | ||| || || || | ||| || | |||||||| || | |||| Sbjct 216687 TTCCAGTCATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCG 216746 Query 18689 GCCTGTTTGTACATTT 18704 ||||| |||||||||| Sbjct 216747 GCCTGCTTGTACATTT 216762 >seq20 Length=311372 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || ||||| || ||||| || | ||||| || || Sbjct 213841 ATGCAGATTTTCGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCA 213782 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||| || ||||| || ||||| || ||||| || || Sbjct 213781 GACACTATTGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 213722 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | ||| |||||||| || |||||| |||||| | || || || || Sbjct 213721 CAACGTCTGATCTTTGCTGGTAAGCAACTGGAAGATGGTAGAACTCTTTCTGACTACAAC 213662 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || || || || || ||||||||||||| ||| Sbjct 213661 ATCCAGAAGGAATCCACCCTCCACTTGGTTCTAAGATTAAGAGGTGGT 213614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870499662400