Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08] 164 sequences; 9,359,670 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq20 140 6e-28 seq12 113 9e-20 seq3 96.9 7e-15 seq110 91.5 3e-13 >seq20 Length=311372 Score = 140 bits (154), Expect = 6e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367 |||||||||||| | |||||| || || | ||| | | |||| || ||||| ||||||| Sbjct 213386 ACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGA-ATATTGTAATCAG 213444 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | |||| | || |||| ||| |||||||| ||||| || | || || ||||| | Sbjct 213445 AAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 213504 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || ||||| || ||| ||| || ||| |||| |||||| || |||| Sbjct 213505 GAATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTA 213564 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || ||||| || || |||||||||| || || | || |||||||| Sbjct 213565 CCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213613 Score = 131 bits (144), Expect = 3e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || |||||||| | |||| | || |||| ||| ||||||||||| ||||| | Sbjct 214115 GATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACG 214174 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || || ||||| || || ||||| |||||||| || || ||| |||||| |||| Sbjct 214175 TTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGT 214234 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || || || || ||||| || || ||||| |||| ||||||| ||| ||||| Sbjct 214235 GTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTG 214294 Query 192534 CATTTTATTA 192543 |||||| ||| Sbjct 214295 CATTTTTTTA 214304 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | ||| || || || | ||||| || || ||| || || ||| Sbjct 213840 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 213899 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| |||||||| |||||||| ||||| || | || || ||||| Sbjct 213900 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 213959 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| || || || || | ||| ||||||||| Sbjct 213960 GGAATACCTTCCTTGTCTTGAATCTTAGACTTAACGTTGTCAATGGTATCCGACGATTCT 214019 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || ||||| || || || || | || |||||||| Sbjct 214020 ACCTCAAGGGTAATAGTCTTACCTGTCAAGGTCTTGACGAAGATCTGCAT 214069 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || || || | || | || || ||| || || ||| Sbjct 213612 ATACCACCTCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 213671 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| |||| ||| |||||||||||||| | | || |||||||| Sbjct 213672 GAAAGAGTTCTACCATCTTCCAGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGA 213731 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| ||||| || |||| ||||| || || Sbjct 213732 GGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCC 213791 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || || ||||||||||| || || | || |||||||| Sbjct 213792 ACTTCAAGAGTGATAGTCTTACCAGTTAAAGTCTTGACGAAAATCTGCAT 213841 >seq12 Length=1006240 Score = 113 bits (124), Expect = 9e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| ||||||||||| | | | || | || ||||||| ||| || ||| || || Sbjct 542933 AATGATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTA 542992 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||||| | |||| | || |||| ||| ||||||||||| || || | ||||| || Sbjct 542993 GTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTC 543052 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||| || |||||||| || ||||| || || || ||||| || | || || || Sbjct 543053 AGGAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGA 543112 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| | ||||| || ||||| ||||| || || | || ||||||||||| Sbjct 543113 CTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 543169 >seq3 Length=641798 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | | || || || ||||||| ||| || ||| || || ||||| Sbjct 231944 ACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGA 231885 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| |||||||| |||||||||||||| | | |||||| ||||| || Sbjct 231884 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 231825 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || || || || || || || || || |||| || || || || || Sbjct 231824 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCAC 231765 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || | || || || ||||| || | || || | || || |||||||| Sbjct 231764 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 231714 >seq110 Length=228 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | ||| || || || | ||||| || || ||| || || ||| Sbjct 160 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 101 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| |||||||| |||||||| ||||| || | || || ||||| Sbjct 100 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 41 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 || || ||||| || ||||| || ||| ||||| || Sbjct 40 GGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984477931361400