Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08]
164 sequences; 9,359,670 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq20 140 6e-28
seq12 113 9e-20
seq3 96.9 7e-15
seq110 91.5 3e-13
>seq20
Length=311372
Score = 140 bits (154), Expect = 6e-28
Identities = 170/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367
|||||||||||| | |||||| || || | ||| | | |||| || ||||| |||||||
Sbjct 213386 ACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGA-ATATTGTAATCAG 213444
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| | |||| | || |||| ||| |||||||| ||||| || | || || ||||| |
Sbjct 213445 AAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 213504
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| || ||||| || ||||| || ||| ||| || ||| |||| |||||| || ||||
Sbjct 213505 GAATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTA 213564
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || ||||| || || |||||||||| || || | || ||||||||
Sbjct 213565 CCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213613
Score = 131 bits (144), Expect = 3e-25
Identities = 143/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || |||||||| | |||| | || |||| ||| ||||||||||| ||||| |
Sbjct 214115 GATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACG 214174
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
|| || ||||| || || ||||| |||||||| || || ||| |||||| ||||
Sbjct 214175 TTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGT 214234
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||||| || || || || ||||| || || ||||| |||| ||||||| ||| |||||
Sbjct 214235 GTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTG 214294
Query 192534 CATTTTATTA 192543
|||||| |||
Sbjct 214295 CATTTTTTTA 214304
Score = 127 bits (140), Expect = 4e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| || | ||| || || || | ||||| || || ||| || || |||
Sbjct 213840 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 213899
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | |||| |||| |||||||| |||||||| ||||| || | || || |||||
Sbjct 213900 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 213959
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || ||| || || || || | ||| |||||||||
Sbjct 213960 GGAATACCTTCCTTGTCTTGAATCTTAGACTTAACGTTGTCAATGGTATCCGACGATTCT 214019
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || ||||| || ||||| || || || || | || ||||||||
Sbjct 214020 ACCTCAAGGGTAATAGTCTTACCTGTCAAGGTCTTGACGAAGATCTGCAT 214069
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| | | || || || || | || | || || ||| || || |||
Sbjct 213612 ATACCACCTCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 213671
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | |||| |||| |||| ||| |||||||||||||| | | || ||||||||
Sbjct 213672 GAAAGAGTTCTACCATCTTCCAGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGA 213731
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || ||| ||||| || |||| ||||| || ||
Sbjct 213732 GGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCC 213791
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| ||||| || || ||||||||||| || || | || ||||||||
Sbjct 213792 ACTTCAAGAGTGATAGTCTTACCAGTTAAAGTCTTGACGAAAATCTGCAT 213841
>seq12
Length=1006240
Score = 113 bits (124), Expect = 9e-20
Identities = 167/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362
||| ||||||||||| | | | || | || ||||||| ||| || ||| || ||
Sbjct 542933 AATGATACCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTA 542992
Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422
||||| | |||| | || |||| ||| ||||||||||| || || | ||||| ||
Sbjct 542993 GTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTC 543052
Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482
||| || |||||||| || ||||| || || || ||||| || | || || ||
Sbjct 543053 AGGAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGA 543112
Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| ||||| | ||||| || ||||| ||||| || || | || |||||||||||
Sbjct 543113 CTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 543169
>seq3
Length=641798
Score = 96.9 bits (106), Expect = 7e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||||||||| | | | || || || ||||||| ||| || ||| || || |||||
Sbjct 231944 ACCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGA 231885
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| |||| |||| |||||||| |||||||||||||| | | |||||| ||||| ||
Sbjct 231884 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 231825
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||| || || || || || || || || || |||| || || || || ||
Sbjct 231824 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCAC 231765
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| | || || || ||||| || | || || | || || ||||||||
Sbjct 231764 CTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 231714
>seq110
Length=228
Score = 91.5 bits (100), Expect = 3e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| || | ||| || || || | ||||| || || ||| || || |||
Sbjct 160 ATACCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCA 101
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | |||| |||| |||||||| |||||||| ||||| || | || || |||||
Sbjct 100 GAAAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 41
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464
|| || ||||| || ||||| || ||| ||||| ||
Sbjct 40 GGAATACCTTCCTTGTCTTGAATCTTAGACTTTACGTT 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984477931361400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |