Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08]
164 sequences; 9,359,670 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq12 107 5e-18
seq110 100 7e-16
seq20 98.7 2e-15
seq25 84.2 5e-11
>seq12
Length=1006240
Score = 107 bits (118), Expect = 5e-18
Identities = 161/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 206158 AAGGCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAA 206217
||| | |||||| ||||| || ||| || | || || || || || || ||||||
Sbjct 543175 AAGACAAAAATG---CAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAA 543119
Query 206218 GTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATT 206277
|| || || ||||| |||| || ||| ||||||||||| || |||||||||
Sbjct 543118 GTCGAGTCCTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATT 543059
Query 206278 TTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTG 206337
|| ||| ||| | | || || || || ||||| ||||||| || || ||| ||
Sbjct 543058 CCTCCTGACCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTG 542999
Query 206338 GCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385
| || |||||| ||||||| ||||||||| | ||||| ||| |||||
Sbjct 542998 TCTGACTACAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGA 542951
>seq110
Length=228
Score = 100 bits (110), Expect = 7e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||||||||| || ||||| ||| || ||| ||| | | ||||||
Sbjct 6 GTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTC 65
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||||| || ||| | | || |||||| |||| || || |||
Sbjct 66 GCTGGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAAAAGGAATCT 125
Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387
||||| ||| | ||||| |||||
Sbjct 126 ACTCTCCACTTGGTTTTAAGACT 148
>seq20
Length=311372
Score = 98.7 bits (108), Expect = 2e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||||||||| || ||||| ||| || ||| ||| | | |||||||| || |||
Sbjct 213985 AAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTCGCTGGTAAG 213926
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| ||||||||||| || ||| | | || |||||| |||| || || |||||||| |||
Sbjct 213925 CAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAAAAGGAATCTACTCTCCAC 213866
Query 206374 CTTGTTTTGAGACT 206387
| ||||| |||||
Sbjct 213865 TTGGTTTTAAGACT 213852
Score = 91.5 bits (100), Expect = 3e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || | || || || || |||||| | |||||||| || |||
Sbjct 213838 CAGATTTTCGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCAGAC 213779
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || |||||| ||||||||||| || ||||| ||| || || |||
Sbjct 213778 ACTATTGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGCAA 213719
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || ||||| || || ||||| |||||||||| || ||| | | || |||||| ||
Sbjct 213718 CGTCTGATCTTTGCTGGTAAGCAACTGGAAGATGGTAGAACTCTTTCTGACTACAACATC 213659
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385
||||| || || || || ||| | ||| | |||
Sbjct 213658 CAGAAGGAATCCACCCTCCACTTGGTTCTAAGA 213626
Score = 84.2 bits (92), Expect = 5e-11
Identities = 152/222 (68%), Gaps = 3/222 (1%)
Strand=Plus/Minus
Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223
|||||| ||||| ||| ||||| || ||||| || || |||||| | || |||||
Sbjct 214300 AAAATG---CAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAG 214244
Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283
|| ||||| | || || || ||||||||||| || ||||| ||| ||
Sbjct 214243 TCATCAGACACTATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCTCCT 214184
Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343
||| ||| | | || || || || ||||| ||||||| || || ||| | | |||
Sbjct 214183 GACCAGCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGAT 214124
Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385
|||||| |||| || || || || || ||| | ||| | |||
Sbjct 214123 TACAACATCCAAAAGGAATCCACCCTCCACTTGGTTCTAAGA 214082
>seq25
Length=524034
Score = 84.2 bits (92), Expect = 5e-11
Identities = 155/225 (69%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166
|| ||||| || | ||||| || ||||| || | ||| ||| | | ||| || |
Sbjct 305046 GCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGCGTAC 304987
Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226
||||| | ||||||||| | ||| ||| | | ||||| ||||||||||| || ||
Sbjct 304986 CAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTCGTAC 304927
Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286
| || || || || | || || | ||| |||| || |||||||| | ||| | ||
Sbjct 304926 AATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTTGGAGAGAAC 304867
Query 173287 AGACTCCAATTTCCA-TCGGTCTCGACCCTCTTCATGAAGAGGTC 173330
|| |||||| ||| || || || || || |||||||| || ||
Sbjct 304866 AGGGTCCAATCGCCATTCTGT-TCTACTCTTTTCATGAACAGATC 304823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181818316699044
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |