Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08] 164 sequences; 9,359,670 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq12 107 5e-18 seq110 100 7e-16 seq20 98.7 2e-15 seq25 84.2 5e-11 >seq12 Length=1006240 Score = 107 bits (118), Expect = 5e-18 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 206158 AAGGCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAA 206217 ||| | |||||| ||||| || ||| || | || || || || || || |||||| Sbjct 543175 AAGACAAAAATG---CAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAA 543119 Query 206218 GTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATT 206277 || || || ||||| |||| || ||| ||||||||||| || ||||||||| Sbjct 543118 GTCGAGTCCTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATT 543059 Query 206278 TTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTG 206337 || ||| ||| | | || || || || ||||| ||||||| || || ||| || Sbjct 543058 CCTCCTGACCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTG 542999 Query 206338 GCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 | || |||||| ||||||| ||||||||| | ||||| ||| ||||| Sbjct 542998 TCTGACTACAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGA 542951 >seq110 Length=228 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||||||||| || ||||| ||| || ||| ||| | | |||||| Sbjct 6 GTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTC 65 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| || ||| | | || |||||| |||| || || ||| Sbjct 66 GCTGGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAAAAGGAATCT 125 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||| | ||||| ||||| Sbjct 126 ACTCTCCACTTGGTTTTAAGACT 148 >seq20 Length=311372 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| ||| || ||| ||| | | |||||||| || ||| Sbjct 213985 AAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTCGCTGGTAAG 213926 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| || ||| | | || |||||| |||| || || |||||||| ||| Sbjct 213925 CAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAAAAGGAATCTACTCTCCAC 213866 Query 206374 CTTGTTTTGAGACT 206387 | ||||| ||||| Sbjct 213865 TTGGTTTTAAGACT 213852 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || |||||| | |||||||| || ||| Sbjct 213838 CAGATTTTCGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCAGAC 213779 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| ||||||||||| || ||||| ||| || || ||| Sbjct 213778 ACTATTGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGCAA 213719 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||| |||||||||| || ||| | | || |||||| || Sbjct 213718 CGTCTGATCTTTGCTGGTAAGCAACTGGAAGATGGTAGAACTCTTTCTGACTACAACATC 213659 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||||| || || || || ||| | ||| | ||| Sbjct 213658 CAGAAGGAATCCACCCTCCACTTGGTTCTAAGA 213626 Score = 84.2 bits (92), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| || ||||| || || |||||| | || ||||| Sbjct 214300 AAAATG---CAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAG 214244 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||||| | || || || ||||||||||| || ||||| ||| || Sbjct 214243 TCATCAGACACTATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCTCCT 214184 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| ||| | | || || || || ||||| ||||||| || || ||| | | ||| Sbjct 214183 GACCAGCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGAT 214124 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 |||||| |||| || || || || || ||| | ||| | ||| Sbjct 214123 TACAACATCCAAAAGGAATCCACCCTCCACTTGGTTCTAAGA 214082 >seq25 Length=524034 Score = 84.2 bits (92), Expect = 5e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 || ||||| || | ||||| || ||||| || | ||| ||| | | ||| || | Sbjct 305046 GCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGCGTAC 304987 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 ||||| | ||||||||| | ||| ||| | | ||||| ||||||||||| || || Sbjct 304986 CAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTCGTAC 304927 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 | || || || || | || || | ||| |||| || |||||||| | ||| | || Sbjct 304926 AATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTTGGAGAGAAC 304867 Query 173287 AGACTCCAATTTCCA-TCGGTCTCGACCCTCTTCATGAAGAGGTC 173330 || |||||| ||| || || || || || |||||||| || || Sbjct 304866 AGGGTCCAATCGCCATTCTGT-TCTACTCTTTTCATGAACAGATC 304823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181818316699044