Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08]
164 sequences; 9,359,670 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq20 167 3e-36
seq3 161 1e-34
seq12 140 4e-28
seq110 109 6e-19
>seq20
Length=311372
Score = 167 bits (184), Expect = 3e-36
Identities = 178/235 (76%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || |||||||| ||||||||||| ||||||
Sbjct 213613 ATGCAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCA 213554
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| || | || |||| ||||| |||||||| || |||||||| ||||||
Sbjct 213553 GATACTATTGATAACGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 213494
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || || |||||||||||||| || || | | | || || | || || |||
Sbjct 213493 CAACGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAAT 213434
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTT 27640
| |||||||||||||||||||| | || || | ||| | ||||| || |||
Sbjct 213433 ATTCAAAAGGAATCCACTCTTCACTTGGTATTAAGACTTAGAGGTGGTGAACTTT 213379
Score = 159 bits (176), Expect = 4e-34
Identities = 157/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || || ||||||||||| |||||||| || ||
Sbjct 214069 ATGCAGATCTTCGTCAAGACCTTGACAGGTAAGACTATTACCCTTGAGGTAGAATCGTCG 214010
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || | ||| |||| ||||| |||||||| || |||||||| ||||||
Sbjct 214009 GATACCATTGACAACGTTAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 213950
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || || |||||||||||| | || |||| | | || || | ||||| ||
Sbjct 213949 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAAC 213890
Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608
||||||||||||| ||||| ||
Sbjct 213889 ATCCAAAAGGAATCTACTCTCCA 213867
Score = 156 bits (172), Expect = 5e-33
Identities = 157/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| || || || || || |||||||| ||||||||||| ||||||
Sbjct 214298 AATGCAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCATC 214239
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| ||| | || | || ||||| || ||||| || |||||||| |||||
Sbjct 214238 AGACACTATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCTCCTGACCA 214179
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| ||| |||||||||||||||||||||| || || | | | || || | || || ||
Sbjct 214178 GCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAA 214119
Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608
|||||||||||||||| || ||
Sbjct 214118 CATCCAAAAGGAATCCACCCTCCA 214095
Score = 154 bits (170), Expect = 2e-32
Identities = 156/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| | || || |||||||| |||||||| || ||||||
Sbjct 213841 ATGCAGATTTTCGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCA 213782
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| |||| ||||| |||||||| || |||||||| || |||
Sbjct 213781 GACACTATTGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 213722
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || ||||||||||||||||| || |||| | | || || | ||||| ||
Sbjct 213721 CAACGTCTGATCTTTGCTGGTAAGCAACTGGAAGATGGTAGAACTCTTTCTGACTACAAC 213662
Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608
|||| ||||||||||| || ||
Sbjct 213661 ATCCAGAAGGAATCCACCCTCCA 213639
>seq3
Length=641798
Score = 161 bits (178), Expect = 1e-34
Identities = 155/199 (78%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| |||||||| |||||||| || | ||||| |||||
Sbjct 231716 AATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 231775
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| || | ||| | || |||||||||||||||||||||||||| |||||
Sbjct 231776 CGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCA 231835
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||||| || ||||||||||||||| | ||||||| | | || | | ||||| ||
Sbjct 231836 ACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAA 231895
Query 27585 TGTCCAAAAGGAATCCACT 27603
|||||||||| || |||
Sbjct 231896 CATCCAAAAGGAGTCTACT 231914
>seq12
Length=1006240
Score = 140 bits (154), Expect = 4e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || |||||||| | ||||| ||||||||||| | || || |||||
Sbjct 543167 AATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTCCTC 543108
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | ||| | ||| | || ||||| |||||||| ||||||||||| |||||
Sbjct 543107 CGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGACCA 543048
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| | |||||||||||||||||||| || || | | | || || | ||||| ||
Sbjct 543047 ACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTACAA 542988
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614
|||| ||||| || ||| | || || ||
Sbjct 542987 CATCCAGAAGGAGTCTACTTTGCACCTGGT 542958
>seq110
Length=228
Score = 109 bits (120), Expect = 6e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||| |||| ||||| |||||||| || |||||||| |||||||| ||| | || || |||
Sbjct 9 AAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTCGCT 68
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
||||||||| | || |||| | | || || | ||||| || ||||||||||||| |||
Sbjct 69 GGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAAAAGGAATCTACT 128
Query 27604 CTTCA 27608
|| ||
Sbjct 129 CTCCA 133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570309230863680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |