Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08]
164 sequences; 9,359,670 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq20 134 9e-27
seq12 116 2e-21
seq3 100 2e-16
>seq20
Length=311372
Score = 134 bits (148), Expect = 9e-27
Identities = 159/213 (75%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||| ||| |||||||| ||||| ||||| ||||| |||| |||||||
Sbjct 214089 ACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCC 214148
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
||||| ||||| ||||| |||||||| || ||||| || || | || ||||| |||
Sbjct 214149 AGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGA 214208
Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||||| | ||| || || ||| |||||| |||||| || | || || || ||
Sbjct 214209 ATCTTG-GATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTT 214267
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
||| |||| ||||| |||||||||||||| ||
Sbjct 214268 ACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 214300
Score = 125 bits (138), Expect = 4e-24
Identities = 168/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 34477 TCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCT 34536
|| || |||||||| | || ||||| || |||||| ||||||||||| || |||||
Sbjct 213384 TCACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCA 213443
Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596
||||| |||| ||||||| ||||| ||||| || || || ||||| || ||||| ||
Sbjct 213444 GAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 213503
Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTC 34655
|| | || ||||||||| ||| || | ||| ||| || ||| || ||| |||
Sbjct 213504 GGAATACCTTCCTTGTCT-TGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTC 213562
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || | || || || ||||| |||| || || || |||||||||||
Sbjct 213563 TACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213613
Score = 105 bits (116), Expect = 4e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||| ||| ||||| || ||||| || || ||||| |||| | |||||
Sbjct 213633 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACCATCTTCC 213692
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
||||| ||||| ||||| || | ||| || || || || || | || |||||||||
Sbjct 213693 AGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGA 213752
Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||||| |||| || | ||| |||||| ||||||||| | || || || ||
Sbjct 213753 ATCTTAGACTTTA-CGTTGTCAATAGTGTCTGATGACTCCACTTCAAGAGTGATAGTCTT 213811
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| ||||| || || || |||||||||||
Sbjct 213812 ACCAGTTAAAGTCTTGACGAAAATCTGCAT 213841
>seq12
Length=1006240
Score = 116 bits (128), Expect = 2e-21
Identities = 145/196 (74%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || ||||| || || || || |||| ||||||| ||||| ||||| |||||
Sbjct 542975 CTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAA 543034
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| ||||| |||||||| || || | ||| ||||||||| ||||| | || ||
Sbjct 543035 AATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTTG-GACTTGACAT 543093
Query 34635 TAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
| || ||||| | ||| ||||||| ||| || || ||||||||||| || || |
Sbjct 543094 TGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGA 543153
Query 34694 CAAAAATCTGCATGTT 34709
| ||||||||||| ||
Sbjct 543154 CGAAAATCTGCATTTT 543169
>seq3
Length=641798
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| || | ||| ||||||||| ||||| || || || | |||| | || ||
Sbjct 231925 ACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCC 231866
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
| ||| ||||| ||||| || | |||||||||||| || || | |||||||||||| ||
Sbjct 231865 AATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTC-CTG 231807
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
| || | || ||| | ||| ||||| |||||| |||| ||| || || ||
Sbjct 231806 AATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTT 231747
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|||||| | || || || ||||| ||||| |||
Sbjct 231746 ACCGGTAAGGGTCTTTACGAAAATTTGCATTTTG 231713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314728970934212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |