Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08] 164 sequences; 9,359,670 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq20 174 4e-38 seq3 152 1e-31 seq12 147 5e-30 seq110 120 7e-22 >seq20 Length=311372 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||||| || | |||||||||||| || ||||| || || ||||| | ||| || || Sbjct 213395 AAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCT 213454 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 || |||||||| ||||| || |||||||| | ||||| ||||||||||||| ||||| Sbjct 213455 ACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTC 213514 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||| || ||||| ||| ||||| || || || || || || ||||| ||||| Sbjct 213515 CTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGT 213574 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || |||||||| || || | |||||| Sbjct 213575 GATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 213613 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | ||| || ||||| || ||||||||||| ||||| | ||| || || || Sbjct 214082 TCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACC 214141 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| || || || || | ||||| ||||||||||||| |||||||| Sbjct 214142 GTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTT 214201 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || ||||| ||| || || || || ||||| || || ||||| |||||||| Sbjct 214202 ATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGAT 214261 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || || || || ||||| | ||||||||| Sbjct 214262 AGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 214300 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | ||| || ||||| || || |||||||| || || | ||| || || || Sbjct 213626 TCTTAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACC 213685 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||||| ||||| || || ||||| || ||||| || |||||||||| |||||||| Sbjct 213686 ATCTTCCAGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGAGGAATACCTTCCTT 213745 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| || ||||| || || ||||| || || || || |||||||| Sbjct 213746 GTCTTGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCCACTTCAAGAGTGAT 213805 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| || || | |||||| Sbjct 213806 AGTCTTACCAGTTAAAGTCTTGACGAAAATCTGCAT 213841 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||||| || | ||| ||||| || || ||||||||||| || || | ||| || || Sbjct 213852 AGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTA 213911 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| ||||| || |||||||| | ||||| ||||||||||||| |||||| Sbjct 213912 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCC 213971 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| || ||||| || ||||| || || ||| ||||| || || Sbjct 213972 TTGTCTTGAATCTTAGACTTAACGTTGTCAATGGTATCCGACGATTCTACCTCAAGGGTA 214031 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | ||||| || || | |||||| Sbjct 214032 ATAGTCTTACCTGTCAAGGTCTTGACGAAGATCTGCAT 214069 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 |||||||||||||| || ||||| || |||||||| |||||||||| | || || || Sbjct 152044 CTTCCAAAGAAGCATGGTAGAGGTGGTCAATCTGCCCTGCGTTTTGCCCGTCTGAGAGAG 152103 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTT 139896 || || || ||||||||| | ||||||||| Sbjct 152104 GAGAAAAGACACAACTACGTTAGAAAAGTT 152133 >seq3 Length=641798 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | ||| | ||| ||||| ||||||||||| || || | | || || || Sbjct 231932 TCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACC 231873 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| ||||| || || ||||| || || |||||||||||||||| ||| ||||| Sbjct 231872 ATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTT 231813 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||| ||||| || ||||| || || ||||| || || ||||| | ||||| Sbjct 231812 GTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGAT 231753 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || || |||||||| || | |||||||| Sbjct 231752 AGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 231714 >seq12 Length=1006240 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || ||||| | ||| ||||| || |||||||| || || | || || || || Sbjct 542951 TCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACC 543010 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| || || || || | ||||||||||||||||||| ||||||||| Sbjct 543011 GTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTT 543070 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| || || || ||||||||||| ||| || || || | || || Sbjct 543071 GTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 543130 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | ||||| || || | ||||||||| Sbjct 543131 AGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 543169 >seq110 Length=228 Score = 120 bits (132), Expect = 7e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||||| || | ||| ||||| || || ||||||||||| || || | ||| || || Sbjct 148 AGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTA 89 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| ||||| || |||||||| | ||||| ||||||||||||| |||||| Sbjct 88 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCC 29 Query 211017 TTGTCCTGGATCTT 211030 ||||| || ||||| Sbjct 28 TTGTCTTGAATCTT 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149564331860