Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016405.1_202016-02-08] 164 sequences; 9,359,670 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq20 141 6e-29 seq12 109 4e-19 >seq20 Length=311372 Score = 141 bits (156), Expect = 6e-29 Identities = 166/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| ||||||||||| || || || || |||||||| || || || || Sbjct 214300 AAAATGCAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCA 214241 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||| ||| | ||| | || | || || || |||||| | || || || Sbjct 214240 TCAGACACTATTGATAATGTCAAATCCAAGA-TTCAAGATAAGGAAGGTATTCCTCCTGA 214182 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || |||||||| ||||| || || ||||||||||||| | ||| | ||||| Sbjct 214181 CCAGCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTA 214122 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTT 23828 |||||| ||||| || ||||| | || || ||| |||| || Sbjct 214121 CAACATCCAAAAGGAATCCACCCTCCACTTGGTTCTAAGATT 214080 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || || || |||||||| ||||| || || | Sbjct 213841 ATGCAGATTTTCGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCA 213782 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | |||| || ||| ||||| |||||| | || || ||||| Sbjct 213781 GACACTATTGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 213722 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || ||||||||||| | | ||| | || |||||| Sbjct 213721 CAACGTCTGATCTTTGCTGGTAAGCAACTGGAAGATGGTAGAACTCTTTCTGACTACAAC 213662 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || ||||| | || || ||| |||| || |||| || Sbjct 213661 ATCCAGAAGGAATCCACCCTCCACTTGGTTCTAAGATTAAGAGGTGG 213615 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || || || |||||||| || || || || | Sbjct 213613 ATGCAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCA 213554 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | ||| || ||| ||||| |||||| | || || || || Sbjct 213553 GATACTATTGATAACGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 213494 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || || || || ||||||||||||| | ||| | |||||||| Sbjct 213493 CAACGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAAT 213434 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| || ||||| | || || || ||||| Sbjct 213433 ATTCAAAAGGAATCCACTCTTCACTTGGTATTAAG 213399 >seq12 Length=1006240 Score = 109 bits (120), Expect = 4e-19 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||| | || || || || || || | ||||| || ||| Sbjct 543169 AAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTCC 543110 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | || ||||| ||||| | || || || Sbjct 543109 TCCGACACCATCGACAATGTCAAGTCCAAGA-TTCAAGACAAGGAAGGAATTCCTCCTGA 543051 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| ||||| || ||||| || || ||||||||||||| | ||| | || || Sbjct 543050 CCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTA 542991 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 |||||| || || ||||| || || || | ||| | || ||| |||| || |||| Sbjct 542990 CAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGGTATCA 542935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008924403312