Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016415.1_202016-02-08] 151 sequences; 9,357,640 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq18 203 5e-47 seq20 100 4e-16 >seq18 Length=305668 Score = 203 bits (224), Expect = 5e-47 Identities = 568/856 (66%), Gaps = 24/856 (3%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || |||| ||| || ||| | || |||||||| || || || || |||| || || Sbjct 101028 GCCTTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATG 101087 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATA-ATATTTTTCTTGTATTAATTCGTA 17979 | ||| || ||||||||||| || || || | ||||| ||| | | Sbjct 101088 TTCTCCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTGCCCAGAG-CTAC 101146 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 | || ||| || || || || || ||||| || ||||||| ||| ||||| || || Sbjct 101147 CAGTAGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAG 101206 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 || || ||| ||||| || | | | ||| || ||||| |||| |||| | || Sbjct 101207 TAAGGAGACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGAT 101266 Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATT-ATAATATAATAAAC 18158 || ||| || ||||| || | | ||| | | | | | || ||| || | Sbjct 101267 AATCTTTTCAAC----GATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGC 101322 Query 18159 ACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACC 18218 | ||||| ||||||||||| || || |||||| | || | || || || || || | Sbjct 101323 AAGCAAAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAAC 101382 Query 18219 CGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATA 18278 | ||||| | |||||| || || | ||| || || || || ||| | |||||||| | Sbjct 101383 CTGGCATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGA 101442 Query 18279 TACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGC-AAAACTGTATTTATTGCTCAG 18336 |||||||||| ||| ||||| || | || | |||||| || | || | | | |||| Sbjct 101443 TACCCTCAACAGCA-GCGAAGGCAACCAAACGTTCAGCGAACAATGCA--TCGTCATCAG 101499 Query 18337 -TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 |||||| | ||||| || | | ||||| || || |||| || |||| Sbjct 101500 AAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCAT 101559 Query 18396 TAAACA--AATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 | |||| ||| || ||||| | |||||| || ||||| || || | ||| || || Sbjct 101560 TGAACAGGAAT--TCAGACTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTA 101617 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 | || || || ||| | ||||| ||||| |||| ||||| || | || ||||| Sbjct 101618 AGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGG 101677 Query 18514 ATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | ||||| ||| || | |||| |||| ||||| || ||||| || |||||||||| | Sbjct 101678 AAGTTGAACCTCAGCACTGAAAT-TTTCCACCAAGTTTTCATTGACAATACCGTCAGAGG 101736 Query 18573 ATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA---GATTG 18628 || || || || | || | | | ||||| |||||||||||| || | |||| Sbjct 101737 CAGCAAAGAAGGCAAGGAC-TCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTA 101795 Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688 ||||| |||| | ||| || || || | ||| || | |||||||| || | |||| Sbjct 101796 TTCCAGTCATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCG 101855 Query 18689 GCCTGTTTGTACATTT 18704 ||||| |||||||||| Sbjct 101856 GCCTGCTTGTACATTT 101871 >seq20 Length=311642 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || || ||||| || ||||| || | ||||| || || Sbjct 97760 ATGCAGATTTTTGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCA 97819 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||| || ||||| || ||||| || ||||| || || Sbjct 97820 GACACTATTGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 97879 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | ||| |||||||| || |||||| |||||| | || || || || Sbjct 97880 CAACGTCTGATCTTTGCTGGTAAGCAACTGGAAGATGGTAGAACTCTTTCTGACTACAAC 97939 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || || || || || ||||||||||||| ||| Sbjct 97940 ATCCAGAAGGAATCCACCCTCCACTTGGTTCTAAGATTAAGAGGTGGT 97987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870618591600