Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016425.1_202016-02-08]
598 sequences; 9,476,861 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq15 118 9e-22
seq24 113 4e-20
seq3 104 2e-17
>seq15
Length=641797
Score = 118 bits (130), Expect = 9e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || |||||||| | |||||||| | ||||| | || |||||||| ||
Sbjct 410081 AATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 410022
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || | ||| | || | ||| ||||| || || ||||| |||||||
Sbjct 410021 CGACACTATTGACAACGTCAAGTCCAAGATTCAG-GACAAGGAGGGAATTCCTCCTGACC 409963
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | || ||||| || || ||||| || |||| | | ||| || || ||||
Sbjct 409962 AACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACA 409903
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| || ||||| || || || | || || || || || | ||||| ||
Sbjct 409902 ACATCCAAAAGGAGTCTACTTTGCACTTGGTCCTTAGATTGAGAGGTGG 409854
>seq24
Length=213729
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | || ||||| | ||||| | || || ||||| ||
Sbjct 213617 ATGCAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCA 213558
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| ||||| || |||| || | || | ||| ||||| ||||| ||||| |||||
Sbjct 213557 GATACTATTGATAACGTCA---AATCTAAGATTCAA-GACAAGGAAGGTATTCCTCCTGA 213502
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| || || | || || || || || ||| | ||||| | | | ||| | |||||
Sbjct 213501 CCAGCAACGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTA 213442
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||||||| |||||||| || || || || |||| || ||||| ||
Sbjct 213441 CAATATTCAAAAGGAATCCACTCTTCACTTGGTATTAAGACTTAGAGGTGG 213391
>seq3
Length=952655
Score = 104 bits (114), Expect = 2e-17
Identities = 148/204 (73%), Gaps = 6/204 (3%)
Strand=Plus/Plus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
|| |||||| || || || ||||| || |||||||| | || || | ||||| |||||
Sbjct 380259 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTC 380318
Query 25055 GTCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
|| ||||| ||||| || || ||| | || | ||| ||||| ||||| ||||| ||
Sbjct 380319 CTCCGACACCATCGA--CAATGTCAAGTCCAAGATTCAA-GACAAGGAAGGAATTCCTCC 380375
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
||||||||| || | |||||||| || || ||| | ||||| | | | ||| || ||
Sbjct 380376 TGACCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGA 380435
Query 25172 TTACAATATTCAAAAAGAATCCAC 25195
||||| || || || || || ||
Sbjct 380436 CTACAACATCCAGAAGGAGTCTAC 380459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433324841851370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |