Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016425.1_202016-02-08] 598 sequences; 9,476,861 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq15 109 5e-19 seq39 98.7 1e-15 seq3 93.3 4e-14 seq24 87.8 2e-12 >seq15 Length=641797 Score = 109 bits (120), Expect = 5e-19 Identities = 144/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || ||| | ||||| | ||| ||||| | | Sbjct 409887 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCAGCA 409946 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||||||||| ||||| || || || ||||| ||| | || | || | Sbjct 409947 AAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTC-CTGAATCTTGGACTTGAC 410005 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| ||||||||||| | || | || ||||| || || || | Sbjct 410006 GTTG-TCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGTCT 410064 Query 138599 TTACAAAAATCTGCAT 138614 |||| ||||| ||||| Sbjct 410065 TTACGAAAATTTGCAT 410080 >seq39 Length=97374 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| || || | | | || |||||||| |||||||| || | ||| | ||| || Sbjct 97276 AACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTC 97217 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||||| ||||| | | | |||| ||| || ||||| ||||| |||||||| || || | Sbjct 97216 CAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCT-T 97158 Query 138525 GATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || | || | ||| | | || | ||||| | ||||||||||| | || | || | Sbjct 97157 GAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCT 97098 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || || ||||| |||||||||||||| Sbjct 97097 TACCTGTTAGGGTTTTAACAAAAATCTGCAT 97067 >seq3 Length=952655 Score = 93.3 bits (102), Expect = 4e-14 Identities = 173/250 (69%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | || ||| | || | | |||||||| || ||||||||||| | Sbjct 380489 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 380430 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||| || ||||| ||||| | | | || | ||| |||||||| ||||| Sbjct 380429 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 380370 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || |||| || | |||||||| ||||| | Sbjct 380369 ATTCCTTCCTTGTC-TTGAATCTTGGACTTGACATTG-TCGATGGTGTCGGAGGACTCGA 380312 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA----TGGCTTAT 138621 | || | || | || ||||| || | || || || |||||||||| || ||| | Sbjct 380311 CTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTTTGTCTTTT 380252 Query 138622 AATATTATTC 138631 ||| ||| || Sbjct 380251 AATGTTAGTC 380242 >seq24 Length=213729 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||||||||| ||||| || | ||| | ||| || ||||| ||||| | Sbjct 213424 GATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCG 213483 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| | ||| || ||||| ||||| |||||||| ||||| ||| | || | ||| | Sbjct 213484 AAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTC-TTGAATCTTAGATTTGAC 213542 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | || || | ||||| ||||| | || | || |||||||| ||||| || Sbjct 213543 GTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTT 213602 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 213603 GACGAAAATCTGCAT 213617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258690438560