Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016425.1_202016-02-08] 598 sequences; 9,476,861 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq39 141 6e-29 seq24 109 4e-19 seq3 109 4e-19 >seq39 Length=97374 Score = 141 bits (156), Expect = 6e-29 Identities = 166/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| ||||||||||| || || || || |||||||| || || || || Sbjct 97064 AAAATGCAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCA 97123 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||| ||| | ||| | || ||| || || |||||| | || || || Sbjct 97124 TCAGACACTATTGATAATGTCAAATC-CAAGATTCAAGATAAGGAAGGTATTCCTCCTGA 97182 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || |||||||| ||||| || || ||||||||||||| | ||| | ||||| Sbjct 97183 CCAGCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTA 97242 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTT 23828 |||||| ||||| || ||||| | || || ||| |||| || Sbjct 97243 CAACATCCAAAAGGAATCCACCCTCCACTTGGTTCTAAGATT 97284 >seq24 Length=213729 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || || || |||||||| || || || || | Sbjct 213617 ATGCAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCA 213558 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | ||| || ||| ||||| |||||| | || || || || Sbjct 213557 GATACTATTGATAACGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 213498 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || || || || ||||||||||||| | ||| | |||||||| Sbjct 213497 CAACGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAAT 213438 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| || ||||| | || || || ||||| Sbjct 213437 ATTCAAAAGGAATCCACTCTTCACTTGGTATTAAG 213403 >seq3 Length=952655 Score = 109 bits (120), Expect = 4e-19 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||| | || || || || || || | ||||| || ||| Sbjct 380260 AAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTCC 380319 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | || ||||| ||||| | || || || Sbjct 380320 TCCGACACCATCGACAATGTCAAGTCCAAGA-TTCAAGACAAGGAAGGAATTCCTCCTGA 380378 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| ||||| || ||||| || || ||||||||||||| | ||| | || || Sbjct 380379 CCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTA 380438 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 |||||| || || ||||| || || || | ||| | || ||| |||| || |||| Sbjct 380439 CAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGGTATCA 380494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007136543784