Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016435.1_202016-02-08]
135 sequences; 9,359,904 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq20 154 2e-32
seq2 93.3 4e-14
seq13 82.4 8e-11
>seq20
Length=435382
Score = 154 bits (170), Expect = 2e-32
Identities = 398/604 (66%), Gaps = 7/604 (1%)
Strand=Plus/Plus
Query 116600 CGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCC 116659
|| || || ||| | ||||| | | |||| || || |||| |||||||| |||||
Sbjct 328500 CGTCGTTTTGTGCTCTTCCCTTTGAAGTACCACGATATCTGGCAAATGTACAAGCAGGCC 328559
Query 116660 GAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG 116719
|| || || || ||||| | ||||| | |||||| ||||| | |||||| |
Sbjct 328560 GAAGCTTCCTTTTGGACTGCTGAGGAAATAGACCTGGGTAAGGATTTGCATGACTGGAAT 328619
Query 116720 ---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCC 116776
|| ||||||| || || |||||| | || || ||||| || || |||
Sbjct 328620 AATCGTATGAACGATAATGAAAAATTCTTCATCTCGAGAGTCCTTGCCTTCTTTGCTGCC 328679
Query 116777 AGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCC 116836
||||| || ||||| || || |||| || |||| | ||||| || | ||
Sbjct 328680 TCTGACGGTATTGTCAATGAAAACTTGGTGGAAAATTTCAGTGCTGAGGTTCAACTTCCC 328739
Query 116837 GAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTAT 116896
|| || ||||| ||||| || |||||| ||||||||| | ||||| || | ||
Sbjct 328740 GAAGCAAAATGCTTTTACGGTTTCCAGATCATGATGGAGAACATTCACTCCGAGACTTAC 328799
Query 116897 TCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTT--TGTTGAACG 116954
|| || || || || ||| | | | | ||| || || |||| || |
Sbjct 328800 TCCTTGCTGATTGATACTTACATCAAAGATCCAAAAGAGT--CTGAATTCCTGTTCAATG 328857
Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCG 117014
|||||||||| || || || ||||||| ||||| || ||||| || | ||||| | |
Sbjct 328858 CCATCGAGACCATTCCATGTATCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTTCTG 328917
Query 117015 GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCT 117074
|| || |||| || || |||| |||||||| || || ||||| ||||||
Sbjct 328918 ATGACGATGCATTGTTCGCTGAACGTTTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCT 328977
Query 117075 TTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGA 117134
|||| || ||| || | || || ||| | ||||| | || |||||||| || |||
Sbjct 328978 TTTCAGGATCTTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTCTCATGCCAGGTTTGA 329037
Query 117135 CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGC 117194
| ||| ||| ||||| || | ||| |||||||| | || |||||||| || ||||
Sbjct 329038 CCTTCTCCAATGAGCTTATTTGCAGAGACGAGGGATTACACACTGACTTTGCTTGCTTGC 329097
Query 117195 TGTT 117198
| ||
Sbjct 329098 TATT 329101
>seq2
Length=937051
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745
||||||||| || ||||| || || | || || || || || ||| | || ||||| |
Sbjct 851169 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTC 851110
Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||||| | | | | ||||| || |||| ||||| || || || || | ||
Sbjct 851109 CTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGA 851050
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||| ||||| | || | || || || || ||||| |||| | || || |||||
Sbjct 851049 CCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTA 850990
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||||| | || |||| || || || | ||||| || ||
Sbjct 850989 CAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 850939
>seq13
Length=751087
Score = 82.4 bits (90), Expect = 8e-11
Identities = 144/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| |||||||| || || || || || || |||||| | || || || |
Sbjct 231714 AAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 231773
Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| || |||| ||||| || |||| ||||| ||||| || || | ||
Sbjct 231774 TCCGACACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGA 231832
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||| || || || |||| || || || || |||| || | | || | |||||
Sbjct 231833 CCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTA 231892
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892
||||||||| |||||| | || ||||
Sbjct 231893 CAACATCCAAAAGGAGTCTACTTTGCA 231919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218330567600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |