Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016435.1_202016-02-08] 135 sequences; 9,359,904 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq20 161 1e-34 seq13 104 2e-17 seq2 96.9 3e-15 >seq20 Length=435382 Score = 161 bits (178), Expect = 1e-34 Identities = 371/556 (67%), Gaps = 11/556 (2%) Strand=Plus/Minus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 ||||||||||||||| || || |||||||| ||| |||| || || ||| ||| || Sbjct 329096 CAAGCAAGCAAAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGT 329037 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 ||| || |||||||| || | || || | ||| || || | || ||| || ||||| Sbjct 329036 CAAACCTGGCATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAA 328977 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070 ||||| ||||| || || ||||| || |||| || || ||||| || || | Sbjct 328976 GAAGATACCCTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAATGCATCGTCATC 328917 Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 | ||||| | || ||||| || ||||||||||||| || || || || |||||||| Sbjct 328916 AGAAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGC 328857 Query 133131 GTTCAACA--AACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCG 133186 || |||| || || ||| || ||| | | ||| || || || || | Sbjct 328856 ATTGAACAGGAATTCAGACTCTTTT----GGATCTTTGATGTAAGTATCAATCAGCAAGG 328801 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 | || | || ||||| | ||||||||| ||| || || ||||||||||| || | Sbjct 328800 AGTAAGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTT 328741 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGC 133306 || | || || || | |||| || |||| ||||| ||||| || ||||| Sbjct 328740 CGGGAAGTTGAACCTCAGCACTGAAATTTTCCACCAAGTTTTCATTGACAATACCGTCAG 328681 Query 133307 TGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG-- 133364 ||| || || ||||| || || | |||||| || || ||||||| || Sbjct 328680 AGGCAGCAAAGAAGGCAAGGACTCTCGAGATGAAGAATTTTTCATTATCGTTCATACGAT 328621 Query 133365 -CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 | |||||| || ||||| |||||| | ||||| | |||||||| || || | Sbjct 328620 TATTCCAGTCATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTT 328561 Query 133424 CGGCTTTTTTGTACAT 133439 |||| | |||||||| Sbjct 328560 CGGCCTGCTTGTACAT 328545 >seq13 Length=751087 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| |||||||| || || || || || || |||||| | || || ||| | Sbjct 231714 AAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 231773 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| || |||| | || || || | ||||| ||||||||||| | || Sbjct 231774 TCCGACACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGA 231832 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| || || | || || || || |||| || | | || | ||||| Sbjct 231833 CCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTA 231892 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||| | || |||| ||||| || | |||||||| || Sbjct 231893 CAACATCCAAAAGGAGTCTACTTTGCACTTGGTCCTTAGATTGAGAGGTGG 231943 >seq2 Length=937051 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| || || | || || || || || ||| | || |||||| | Sbjct 851169 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTC 851110 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||||| | | | | | || || || | ||||| || |||||||| | || Sbjct 851109 CTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGA 851050 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 |||||| || | |||| || || || || ||||| |||| | || || ||||| Sbjct 851049 CCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTA 850990 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || |||| |||| ||| | |||||||| || Sbjct 850989 CAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 850939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171955958400