Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016445.1_202016-02-08]
165 sequences; 9,358,797 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq28 178 2e-39
seq1 105 1e-17
>seq28
Length=426313
Score = 178 bits (196), Expect = 2e-39
Identities = 555/852 (65%), Gaps = 17/852 (2%)
Strand=Plus/Minus
Query 125009 GTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGA 125068
||| || || || ||| |||||||||| |||| | || ||||||||||| | || ||
Sbjct 106958 GTACCACGATATCTGGCAAATGTACAAGCAGGCCGAAGCTTCCTTTTGGACTGCTGAGGA 106899
Query 125069 GGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGA 125128
| || ||| ||||| || | || ||| | | |||| ||| || | ||| |
Sbjct 106898 AATAGACCTGGGTAAGGATTTGCATGACTGGAATAATCGTATGAACGATAATGAAAAATT 106839
Query 125129 GTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT 125188
|| || ||| | | ||||||||||| | ||| || || || ||||| || || |
Sbjct 106838 CTTCATCTCGAGAGTCCTTGCCTTCTTTGCTGCCTCTGACGGTATTGTCAATGAAAACTT 106779
Query 125189 GTTGACACGATTCTCTCAAGAG-TTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCC 125247
| || | ||| | ||| || | | |||| || | ||||||||||| ||||
Sbjct 106778 GGTGGAAAATTTCAGTGCTGAGGTTCAAC-TTCCCGAAGCAAAATGCTTTTACGGTTTCC 106720
Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307
| |||||||| |||||| | ||||| || | ||||| |||||||| | |||||
Sbjct 106719 AGATCATGATGGAGAACATTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCA 106660
Query 125308 GCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367
||||| || | | || || || || ||||| || | || | |||
Sbjct 106659 AAGATCCAAAAGAGTCTGAATTCCTGTTCAATGCCATCGAGACCATTCCATGTATCAAAG 106600
Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427
|||||||| | |||| || | ||||| ||| ||| | | | || ||| || |
Sbjct 106599 AAAAGGCTGACTGGGCCATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTT 106540
Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487
|||| || ||||| || || ||||| ||||||||||| || |||||| | ||||| |
Sbjct 106539 TGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTTCAGGATCTTTTGCTTCTATCTTCT 106480
Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547
|| | |||||| | || |||||||| || |||| | || ||| |||| | |||
Sbjct 106479 GGTTGAAGAAGAGAGGTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAG 106420
Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607
||||||| ||||| ||||||||| || || || | | ||| | | |
Sbjct 106419 ACGAGGGATTACACACTGACTTTGC-------TTGCTT-GCTATTTTCT-CATTTAAACA 106369
Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667
||| |||| || |||| || || ||| | || || || || ||| ||| ||
Sbjct 106368 ATAGAGCCAGTGAGGAAATCGTTGAAAAGATTATCACAGAGGCTGTCGAGATCGAAAAAA 106309
Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727
|| | || || | || || ||| | | | || |||||||||| | ||||||
Sbjct 106308 GGTACTTCACAGACGCTCTTCCTGTCTCCTTACTGGGGATGAACTGCAGCTTGATGTGCC 106249
Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC---AAGATTT 125784
|||| | ||||| || || || | |||||| || | | ||| | ||| | |
Sbjct 106248 AGTATGTTGAGTTCGTTGCTGACAGACTACTG--GTAGCT-CTGGGCAACAAAAAGGTGT 106192
Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844
|||||| ||| ||||| ||||| |||||| | ||| || | | ||||| |||||||
Sbjct 106191 ACAACGTCAACAATCCATTTGACTTCATGGAGAACATTTCTTTGGCCGGTAAAACCAACT 106132
Query 125845 TTTTCGAGAAGA 125856
| ||||| ||||
Sbjct 106131 TCTTCGAAAAGA 106120
>seq1
Length=591226
Score = 105 bits (116), Expect = 1e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|||||| ||||||||||||||||||| || ||| | || | || | ||||| ||||
Sbjct 279576 GGCGATTTGGGGCCAGTGTACGGATTTCAATGGCGCCATTTTGGAGCTCAGTATAAAGAC 279635
Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTC 70186
|| |||||||||| | || || || |||||||| | | | ||||| |||||
Sbjct 279636 TGTAAGACAGACTACACTGGACAAGGGTTTGATCAACTTTCTAGGGTAATTGAAACTCTT 279695
Query 70187 AAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCAC 70246
||||||||| || || || || | ||| | ||||||| ||| ||||||| |
Sbjct 279696 CGTACCAATCCATATGACAGAAGAATAATCATGAGTGCATGGAACCCTCCAGATTTTGAG 279755
Query 70247 CAAATGGCACTACCACCGTGTCA 70269
||||||| || ||||| |||||
Sbjct 279756 AAAATGGCTCTCCCACCCTGTCA 279778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741057671565400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |