Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016445.1_202016-02-08]
165 sequences; 9,358,797 total letters
Query= NC_006949.1
Length=46900
Score E
Sequences producing significant alignments: (Bits) Value
seq57 389 1e-103
>seq57
Length=4629
Score = 389 bits (430), Expect = 1e-103
Identities = 697/1010 (69%), Gaps = 16/1010 (2%)
Strand=Plus/Minus
Query 26402 TTACGTATTATTCGTACCTTCCTTATTTTTATTGTGGGACATATTTGGGACAGAAGTACC 26461
||||| || || || | ||| || ||| | ||||||||||||||||||| | |||
Sbjct 1165 TTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACC 1106
Query 26462 AAAAATCGAGTCAATTTGTCGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATA 26521
|||||| ||| |||| | ||||| || |||| ||||| || || || ||||||||
Sbjct 1105 AAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATA 1046
Query 26522 TCTGCGAACCATTTCGATAGACTCCCAGCCACCCATTTCCTGCAATACCGAAATCGGAAC 26581
|| ||||||||||| || |||||||| || ||||||||||| | || || | || ||
Sbjct 1045 CCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGAC 986
Query 26582 GCCAGCCTGAACTAACCAACTTGCCCACGTGTGCCTCAGGTCATGAAAACGGAAGTCTTC 26641
||| | ||||| | ||| |||||||| ||||| || |||||||| |||||||| |||||
Sbjct 985 GCCTGACTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC 926
Query 26642 AATGCCCGCTCGTTTTAATGCTGCCCTCCATGCCGTATTAGCGTCATAGCGCATCTTCCT 26701
||| || || || | |||| ||||| || || ||| ||||||||||||
Sbjct 925 AATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCT 866
Query 26702 CACTACAGGTGATTTAGTTCCGTCTGGTTTGGT-GCTGCTTTCCT-TGTAGACGAACACC 26759
|| |||| | | ||||| |||| | | || || || | ||| || ||||||
Sbjct 865 GACCGCAGGCGTTGATGTTCCATCTGCTCGCTTAGCCGCCTTGGTATGT--ACAAACACC 808
Query 26760 CATTTGTGATGATTGCCGATTTGCTTTTTCAGCACCCGGCAAGCGGTATCATTCAGCGCC 26819
||||||||||| ||||| ||||| | || ||| || |||||||| |||||||||
Sbjct 807 CATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCC 748
Query 26820 ACTCCAATGGCATGATTAGACTTGCTTTGTTCCGGGTGTATCCATGCCACCTTTCGTTGC 26879
|| |||||||| | || || ||||| | ||| || | | ||| || || ||| |||
Sbjct 747 ACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGC 688
Query 26880 ATGTCTATCTGCTGCCACTCCAGATTGATAATGTTAGACCGCCTTAAGCCAGTAGAAAGC 26939
||||| || || ||||| |||||||| || ||||| ||| || | ||||| | |||
Sbjct 687 ATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCAGTTGCCAGC 628
Query 26940 GCAAACTCTACGACTGACTTTAGCGGTTCCGGGCATTCATCAATCAACCTTTTTGCCTCG 26999
||||||| ||||| || || || ||||| ||||| |||||||| | | |||||| ||
Sbjct 627 GCAAACTTGACGACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCC 568
Query 27000 TGAGGCTCAAGCCAGCGAATACGCTTATTTTT--CGGCTGAGGAACTTTAACGATCGGAG 27057
| || ||||| | | ||||| ||| | | ||| || | || | || || |
Sbjct 567 TCCTTTTCCAGCCATCTGACTCGCTTGTTTCTGACCGCT--GGTATCTTGATGACAGGCG 510
Query 27058 CCTTATCCAGCATCTTCCATTCGCGTTCAGCAGTTCGTAGGAGTGCCTTAATGAATGAAA 27117
| || |||||| |||||| |||||||| |||| || || | ||||| || | | ||
Sbjct 509 CTTTTTCCAGCCACTTCCAGTCGCGTTCTGCAGCACGGAGAATGGCCTTTATCATGGCAA 450
Query 27118 GGTGAGTTGCTTTTGTGGCTATCGCTGCTGGCTTAGGTTTGAATACCGGAGGCTGCTTTC 27177
| || |||| ||||| | | | ||||||| |||| | || || | | || |
Sbjct 449 GATGCTTTGCCTTTGTCTGAGTTGATACTGGCTTTGGTTCATAAACAGGCAGTTCTTTAC 390
Query 27178 CTTTCTTCCTGCAAGCTTCTTCCATCATCTTCCAGTTTTCCTCGTGACGACGATTTGTCA 27237
||||| | || || | | || ||||| |||| | || | | ||| |
Sbjct 389 CTTTCCTGATGGCGGCCTGAACTTTCTGTTTCCATATTTC----TTTCGTCTTTCTGTTA 334
Query 27238 T--CTTCTG--GATGGCGGAGTAAATCTTCGTTTCGGTAATATCTTTCAACTGAATCCCT 27293
| ||||| | || ||||||||||| | || | |||||||| | | || ||
Sbjct 333 TGCATTCTGCTTACAGCAGAGTAAATCTTTGCCTCCGAGATATCTTTAAGCCTTATACCC 274
Query 27294 GCAAAATGCTGGAGCCAGAATCCTATCCGGCTTTTGTCATCGTCCAGCGACTTCTTATGC 27353
||||||| | |||||||| | ||||||||||| || || || || || ||||
Sbjct 273 TCAAAATGTTCAAGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCA 214
Query 27354 GCCTTCTCCTCTAACCACCTGACACAGGCTTCCTCAAAAGTCATGTCAGG 27403
|| || ||||| | ||| || | ||||| || |||||||| | |||||
Sbjct 213 GCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGG 164
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149958106175260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |