Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016445.1_202016-02-08] 165 sequences; 9,358,797 total letters Query= NC_011802.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq57 407 4e-109 >seq57 Length=4629 Score = 407 bits (450), Expect = 4e-109 Identities = 689/989 (70%), Gaps = 12/989 (1%) Strand=Plus/Minus Query 3106 TCCTTATTTTTACTGTGGGACATATTTGGGACAGAAGTACCAAAAATCGAGTCAATTTGT 3165 ||| || ||| | ||||||||||||||||||| | ||||||||| ||| |||| Sbjct 1146 TCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTC 1087 Query 3166 CGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATATCTGCGAACCATTTCGATA 3225 | ||||| || |||| ||||| || || || |||||||| || ||||||||||| || Sbjct 1086 CTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATG 1027 Query 3226 GACTCCCAGCCACCCATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAG 3285 |||||||| || ||||||||||| | || || | || ||||| | ||||| | |||| Sbjct 1026 GACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGACGCCTGACTGAATCAGCCAG 967 Query 3286 CTTGCCCACGTGTGCCTCAGGTCATGAAAACGGAAGTCTTCAATGCCTGCTCGTTTTAAT 3345 |||||||| ||||| || |||||||| |||||||| |||||||| ||||| || | Sbjct 966 CTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAA 907 Query 3346 GCTGACCTCCATGCAGTATTAGCGTCATAGCGCATCTTCCTCACTACAGGTGATTTAGTT 3405 ||||| ||||| || || ||| |||||||||||| || |||| | | ||| Sbjct 906 GCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAGGCGTTGATGTT 847 Query 3406 CCGTCTGGCTTGGT--GCTGCTTTCCT-TGTAGACGAACACCCATTTGTGATGATTGCCT 3462 || |||| || | | || || || | |||| | ||||||||||||||||| |||||| Sbjct 846 CCATCTG-CTCGCTTAGCCGCCTTGGTATGTACA--AACACCCATTTGTGATGCTTGCCT 790 Query 3463 ATTTGCTTTTTCAGCACCCGGCAAGCAGTATCATTCAGCGCCACGCCAATGGCCTGATTG 3522 ||||| | || ||| || || ||||| ||||||||||| |||||||| | || Sbjct 789 ATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCGGTTT 730 Query 3523 GACTTACTTTGTTCCGGGTGTATCCATGCCACCTTTCGCTGCATGTCTATCTGCTGCCAC 3582 || || || | ||| || | | ||| || || |||||||||||| || || ||||| Sbjct 729 GATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCAT 670 Query 3583 TCCATATTGATAATGTTAGACCGCCTTAAGCCAGTAGAAAGCGCAAACTCTACGACTGAC 3642 |||| ||| || ||||| ||| || | ||||| | |||||||||| ||||| || Sbjct 669 TCCAGATTTATGATGTTCGACTTTCTCAGACCAGTTGCCAGCGCAAACTTGACGACAGAT 610 Query 3643 TTTAGCGGTTCCGGGCATTCATCAATCAACCTTTTTGCCTCGTGAGGCTCAAGCCAGCGG 3702 || || ||||| ||||| |||||||| | | |||||| || | || ||||| | | Sbjct 609 TTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTG 550 Query 3703 ATACGCTTATTTTT--CGGCTGAGGAACTTTGATGATCGGAGCCTTATCCAGCATCTTCC 3760 | ||||| ||| | | ||| || | ||||||| || || || |||||| ||||| Sbjct 549 ACTCGCTTGTTTCTGACCGCT--GGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCC 492 Query 3761 ATTCGCGTTCAGCAGCCCGGAGGAGTGCCTTAATGAATGAAAGGTGAGTTGCTTTTGTGG 3820 | |||||||| ||||| ||||| | ||||| || | | ||| || |||| ||||| Sbjct 491 AGTCGCGTTCTGCAGCACGGAGAATGGCCTTTATCATGGCAAGATGCTTTGCCTTTGTCT 432 Query 3821 CTACTGCTGCCGGCTTAGGCTTGAATACTGGAGGCTGCTTCCCATTCTTCCTGCAAGCTT 3880 || | | ||||| || | | || || | | || || ||| | || || | Sbjct 431 GAGTTGATACTGGCTTTGGTTCATAAACAGGCAGTTCTTTACCTTTCCTGATGGCGGCCT 372 Query 3881 CATCCATTAACTTCCAGTTTTCCTCATGCCGCCGATTAGTCA-TCTTCTGGATGGCGGAG 3939 | | | ||||| |||| | | | ||| || ||| || | || ||| Sbjct 371 GAACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGTTATGCATTCTGCT-TACAGCAGAG 313 Query 3940 TAAATCTTCGTCTCGGTAATATCCTTCAACTGCATCCCTGCAAAATGCTGGAGCCAGAAT 3999 |||||||| | ||| | ||||| || | | || || ||||||| | |||||||| Sbjct 312 TAAATCTTTGCCTCCGAGATATCTTTAAGCCTTATACCCTCAAAATGTTCAAGCCAGAAC 253 Query 4000 CCTATCCGACTCTTGTCATCATCCAGCGACTTCTTATGCGCCTTCTCCTCTAACCACCTG 4059 | ||||| || || || ||| || || || |||| || || ||||| | ||| || Sbjct 252 TCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTT 193 Query 4060 ACACAGGCCTCCTCAAAAGTCATGTCAGG 4088 | |||||||| |||||||| | ||||| Sbjct 192 AGGCAGGCCTCTTCAAAAGTGACATCAGG 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134089337268190