Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016445.1_202016-02-08]
165 sequences; 9,358,797 total letters
Query= NC_027339.1
Length=38389
Score E
Sequences producing significant alignments: (Bits) Value
seq57 405 1e-108
>seq57
Length=4629
Score = 405 bits (448), Expect = 1e-108
Identities = 733/1060 (69%), Gaps = 19/1060 (2%)
Strand=Plus/Minus
Query 21245 GGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAAT-CAATAAGTTACACATCATTA 21303
|| || |||||||| |||| || |||||| ||| |||| |||||| | | ||
Sbjct 1212 GGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTT 1153
Query 21304 GTACCTTCCTTATTTTTTGACTGGGACAAATTTGGGACCGATGGGTTC--AGGATCGAGT 21361
|| | ||| || ||| || ||||||| ||||||||| || | | || ||
Sbjct 1152 ATATCCTCCATAATTTCAGAGTGGGACATATTTGGGAC--ATTATCACCAAAAATGTCGT 1095
Query 21362 CTATTTGCCGTGCGTGTTCGGTAAGGTGATTAGGTGCAAGGTGAGCATATCGACGAACCA 21421
|||||| || || || || || | |||||||| |||||||||||||| | ||||||||
Sbjct 1094 CTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCA 1035
Query 21422 TTTCGATAGACTCCCAGCCTCCCATTTCCTGTAACACTGACAATGGGACTCCGGCTTGAA 21481
|||| || |||||||| || ||||||||||| | |||||| |||||||| || | ||||
Sbjct 1034 TTTCTATGGACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGACGCCTGACTGAA 975
Query 21482 CCAGCCAACTTGCCCAGGTGTGTCTCAAGTCGTGAAATCTGAAATCATCAATACCAGCCC 21541
|||||| ||||||||||||||||| | ||| || || | |||||| ||||| || || |
Sbjct 974 TCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCAC 915
Query 21542 GTCTCAGCGCCGCTTTCCAGGCTGTGTTTGCGTCATACCGCATCTTCCTTACTGTTGGCG 21601
| | || | | ||| | ||| || ||| ||||||||||| || | ||||
Sbjct 914 GACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAGGCG 855
Query 21602 CTTTCGTTCCGTCTGGTTTGGTA-CAGCTTTCCTTGTATACAAATACCCAACGGTGATGA 21660
| ||||| |||| | || | || || | | |||||| ||||| ||||||
Sbjct 854 TTGATGTTCCATCTGCTCGCTTAGCCGCCTTGGTA-TGTACAAACACCCATTTGTGATGC 796
Query 21661 TTCCCGATTTGTTTTTTCAATACGCGACATGCAGTATCATTCAGCGCAACGCCAATTGCG 21720
|| || ||||| | ||| || ||| || ||||| |||||||| || ||||| |||
Sbjct 795 TTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCG 736
Query 21721 CGGTTTGATTTACTCTCTTCCGGGTTTATCCATGCCACCCGGCGCTGCATGTCTATTTGT 21780
||||||||||| |||||||| || || | ||| || || || ||||||||||| ||||||
Sbjct 735 CGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGT 676
Query 21781 TGCCATTCAAGGTTGATGATGTTCGAGCGTCTTAAGCCTGTTGCCAGTGCAAATTCAACA 21840
|||||||| || || ||||||||||| ||| | || |||||||| ||||| | ||
Sbjct 675 TGCCATTCCAGATTTATGATGTTCGACTTTCTCAGACCAGTTGCCAGCGCAAACTTGACG 616
Query 21841 ACAGACTTTAATGGCTCCGGACATTCATCAATCAGCCTTTGTGCTTCATGAGGCTCCAGC 21900
||||| || | ||| || || || |||||||| || | || |||||| | ||||||
Sbjct 615 ACAGATTTCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGC 556
Query 21901 CAGCGGATACG-TTTATTCT-TCGGTTGAGGCACTTTAATAATTGGTGCCTTATCCAGCA 21958
|| | || || || |||| | | | || | || || | || || || ||||||
Sbjct 555 CATCTGACTCGCTTGTTTCTGACCGCT--GGTATCTTGATGACAGGCGCTTTTTCCAGCC 498
Query 21959 TTTTCCATTCACGCTCTGCGGCTCTTAGCAGGGCCTTTATAAATGAAAGATGCGTAGCCT 22018
||||| || || ||||| || | || | ||||||||| | | ||||||| | ||||
Sbjct 497 ACTTCCAGTCGCGTTCTGCAGCACGGAGAATGGCCTTTATCATGGCAAGATGCTTTGCCT 438
Query 22019 TCGTTGCAACGGACGCTGGTTTTGGCGTGTATTCTGGAACAGGTTTCCCtttttttCTGC 22078
| || | || |||| ||||| || | || | ||| ||||| | ||
Sbjct 437 TTGTCTGAGTTGATACTGGCTTTGGTTCATAAACAGGCAGTTCTTTACCTTTCCTGATGG 378
Query 22079 ATGCTTCTGCCCTGAGTTTCCAGTTTTCCTCATGACGCCGGTTCGTCAT--TTTCTGC-- 22134
|| | | | ||||||| |||| | || | | || || ||||||
Sbjct 377 CGGCCTGAACTTTCTGTTTCCATATTTC----TTTCGTCTTTCTGTTATGCATTCTGCTT 322
Query 22135 ATTGCTGAATAAATTTTTGATTCAGTAATGTCTTTTAGTTGCATTCCTGCGAAATGTTGA 22194
| || || ||||| |||| || | || ||||| || || || | ||||||| |
Sbjct 321 ACAGCAGAGTAAATCTTTGCCTCCGAGATATCTTTAAGCCTTATACCCTCAAAATGTTCA 262
Query 22195 AGCCAGAATCCGATCCGGCTTTTGTCATCGTCCAGTGATTTTTTATGTGCTTTCTCTTCG 22254
|||||||| | ||||||||||| || || || |||||||||| ||||| || ||
Sbjct 261 AGCCAGAACTCAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCA 202
Query 22255 AGCCACCTGACACACGCTTCCTCAAACGTCATATCAGGTA 22294
||||| || | || || || ||||| || | ||||||||
Sbjct 201 AGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTA 162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122722959539230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |