Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016445.1_202016-02-08] 165 sequences; 9,358,797 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq57 387 4e-103 >seq57 Length=4629 Score = 387 bits (428), Expect = 4e-103 Identities = 678/979 (69%), Gaps = 10/979 (1%) Strand=Plus/Minus Query 22516 TCCTTATTTTTACTGTGGGACATATTTGGGACAGAAGTACCAAAAATCGAGTCAATTTGT 22575 ||| || ||| | ||||||||||||||||||| | ||||||||| ||| |||| Sbjct 1146 TCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTC 1087 Query 22576 CGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATATCGGCGAACCATTTCGATA 22635 | ||||| || |||| ||||| || || || |||||||| | ||||||||||| || Sbjct 1086 CTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATG 1027 Query 22636 GACTCCCAGCCACCCATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAA 22695 |||||||| || ||||||||||| | || || | || ||||| | ||||| | ||| Sbjct 1026 GACTCCCATCCGCCCATTTCCTGAAGCACTGATAATGGGACGCCTGACTGAATCAGCCAG 967 Query 22696 CTTGCCCACGTGTGCCTCAGGTCATGAAAACGGAAGTCTTCAATGCCCGCTCGTTTTAAT 22755 |||||||| ||||| || |||||||| |||||||| |||||||| || || || | Sbjct 966 CTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAA 907 Query 22756 GCTGCCCTCCATGCAGTATTAGCGTCATAGCGCATCTTCCTCACTACAGGTGATTTAGTT 22815 |||| ||||| || || ||| |||||||||||| || |||| | | ||| Sbjct 906 GCTGATAGCCATGATGTCTTGCTGTCGATGCGCATCTTCCTGACCGCAGGCGTTGATGTT 847 Query 22816 CCGTCTGGTTTGGT-GCTGCTTTCCT-TGTAGACGAACACCCATTTGTGATGATTGCCGA 22873 || |||| | | || || || | |||| | ||||||||||||||||| ||||| | Sbjct 846 CCATCTGCTCGCTTAGCCGCCTTGGTATGTACA--AACACCCATTTGTGATGCTTGCCTA 789 Query 22874 TTTGCTTTTTCAGCACCCGGCAAGCGGTATCATTCAGCGCCACTCCAATGGCATGATTAG 22933 |||| | || ||| || |||||||| ||||||||||| |||||||| | || | Sbjct 788 TTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCGGTTTG 729 Query 22934 ACTTGCTTTGTTCCGGGTGTATCCATGCCACCTTTCGTTGCATGTCTATCTGCTGCCACT 22993 | ||||| | ||| || | | ||| || || ||| |||||||| || || ||||| | Sbjct 728 ATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATT 669 Query 22994 CCAGATTGATAATGTTAGACCTCCTTAAGCCAGTAGAAAGCGCAAACTCTACGACTGACT 23053 ||||||| || ||||| ||| | || | ||||| | |||||||||| ||||| || | Sbjct 668 CCAGATTTATGATGTTCGACTTTCTCAGACCAGTTGCCAGCGCAAACTTGACGACAGATT 609 Query 23054 TTAGCGGTTCCTGGCATTCATCAATCAACCTTTTTGCCTCGTGAGGCTCAAGCCAGCGGA 23113 | || ||||| |||| |||||||| | | |||||| || | || ||||| | || Sbjct 608 TCAGTGGTTCGGGGCACTCATCAATAAGGCGTTTTGCTTCCTCCTTTTCCAGCCATCTGA 549 Query 23114 TACGCTTATTTTT--CGGCTGAGGAACTTTGATGATCGGAGCCTTATCCAGCATCTTCCA 23171 ||||| ||| | | ||| || | ||||||| || || || |||||| |||||| Sbjct 548 CTCGCTTGTTTCTGACCGCT--GGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCA 491 Query 23172 TTCGCGTTCAGCAGCCCGGAGGAGTGCCTTAATGAATGAAAGGTGAGTTGCTTTTGTGGC 23231 |||||||| ||||| ||||| | ||||| || | | ||| || |||| ||||| Sbjct 490 GTCGCGTTCTGCAGCACGGAGAATGGCCTTTATCATGGCAAGATGCTTTGCCTTTGTCTG 431 Query 23232 TACTGCTGCCGGCTTAGGCTTGAATACTGGAGGCTGCTTCCCATTCTTCCTGCAAGCTTC 23291 || | | ||||| || | | || || | | || || ||| | || || | Sbjct 430 AGTTGATACTGGCTTTGGTTCATAAACAGGCAGTTCTTTACCTTTCCTGATGGCGGCCTG 371 Query 23292 ATCCATTAACTTCCAGTTTTCCTCATGCCGCCGATTAGTCA-TCTTCTGGATGGCGGAGT 23350 | | | ||||| |||| | | | ||| || ||| || | || |||| Sbjct 370 AACTTTCTGTTTCCATATTTCTTTCGTCTTTCTGTTATGCATTCTGCT-TACAGCAGAGT 312 Query 23351 AAATCTTCGTCTCGGTAATATCCTTCAACTGCATCCCTGCAAAATGCTGGAGCCAGAATC 23410 ||||||| | ||| | ||||| || | | || || ||||||| | |||||||| Sbjct 311 AAATCTTTGCCTCCGAGATATCTTTAAGCCTTATACCCTCAAAATGTTCAAGCCAGAACT 252 Query 23411 CTATCCGACTCTTGTCATCATCCAGCGACTTCTTATGCGCCTTCTCCTCTAACCACCTGA 23470 | ||||| || || || ||| || || || |||| || || ||||| | ||| || | Sbjct 251 CAATCCGGCTTTTATCTGAATCGAGAGATTTTTTATCAGCTTTTTCCTCAAGCCATCTTA 192 Query 23471 CACAGGCCTCCTCAAAAGT 23489 |||||||| |||||||| Sbjct 191 GGCAGGCCTCTTCAAAAGT 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129295746660650