Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016465.1_202016-02-08] 154 sequences; 9,358,013 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7 109 5e-19 seq29 98.7 1e-15 seq12 93.3 4e-14 seq30 87.8 2e-12 >seq7 Length=489141 Score = 109 bits (120), Expect = 5e-19 Identities = 144/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || ||| | ||||| | ||| ||||| | | Sbjct 79217 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCAGCA 79158 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||||||||| ||||| || || || ||||| ||| | || | || | Sbjct 79157 AAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTC-CTGAATCTTGGACTTGAC 79099 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| ||||||||||| | || | || ||||| || || || | Sbjct 79098 GTTG-TCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGTCT 79040 Query 138599 TTACAAAAATCTGCAT 138614 |||| ||||| ||||| Sbjct 79039 TTACGAAAATTTGCAT 79024 >seq29 Length=97382 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| || || | | | || |||||||| |||||||| || | ||| | ||| || Sbjct 97284 AACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTC 97225 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||||| ||||| | | | |||| ||| || ||||| ||||| |||||||| || || | Sbjct 97224 CAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCT-T 97166 Query 138525 GATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || | || | ||| | | || | ||||| | ||||||||||| | || | || | Sbjct 97165 GAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCT 97106 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || || ||||| |||||||||||||| Sbjct 97105 TACCTGTTAGGGTTTTAACAAAAATCTGCAT 97075 >seq12 Length=252120 Score = 93.3 bits (102), Expect = 4e-14 Identities = 173/250 (69%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | || ||| | || | | |||||||| || ||||||||||| | Sbjct 86111 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 86052 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||| || ||||| ||||| | | | || | ||| |||||||| ||||| Sbjct 86051 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 85992 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || |||| || | |||||||| ||||| | Sbjct 85991 ATTCCTTCCTTGTC-TTGAATCTTGGACTTGACATTG-TCGATGGTGTCGGAGGACTCGA 85934 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA----TGGCTTAT 138621 | || | || | || ||||| || | || || || |||||||||| || ||| | Sbjct 85933 CTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTTTGTCTTTT 85874 Query 138622 AATATTATTC 138631 ||| ||| || Sbjct 85873 AATGTTAGTC 85864 >seq30 Length=213753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||||||||| ||||| || | ||| | ||| || ||||| ||||| | Sbjct 306 GATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCG 247 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| | ||| || ||||| ||||| |||||||| ||||| ||| | || | ||| | Sbjct 246 AAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTC-TTGAATCTTAGATTTGAC 188 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | || || | ||||| ||||| | || | || |||||||| ||||| || Sbjct 187 GTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTT 128 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 127 GACGAAAATCTGCAT 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261444694880